Mercurial > repos > lparsons > htseq_count
comparison htseq-count.xml @ 2:8f0f896ec527
Added tool_dependencies.xml
| author | Lance Parsons <lparsons@princeton.edu> |
|---|---|
| date | Fri, 31 Aug 2012 15:23:53 -0400 |
| parents | 4de3f044aaeb |
| children | c6d73933f601 |
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| 1:4de3f044aaeb | 2:8f0f896ec527 |
|---|---|
| 1 <tool id="htseq_count" name="htseq-count" version="0.1"> | 1 <tool id="htseq_count" name="htseq-count" version="0.1"> |
| 2 <description> - Count aligned reads in a BAM file that overlap features in a GFF file</description> | 2 <description> - Count aligned reads in a BAM file that overlap features in a GFF file</description> |
| 3 <version_command>htseq-count -h | grep version | sed 's/^\(.*\)*\(version .*\)\./\2/'</version_command> | 3 <version_command>htseq-count -h | grep version | sed 's/^\(.*\)*\(version .*\)\./\2/'</version_command> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="python-package" version="0.5.3.p9">HTSeq</requirement> | 5 <requirement type="package" version="1.6.2">numpy</requirement> |
| 6 <requirement type="package" version="0.5.3.p9">htseq</requirement> | |
| 6 <requirement type="package" version="0.1.18">samtools</requirement> | 7 <requirement type="package" version="0.1.18">samtools</requirement> |
| 7 </requirements> | 8 </requirements> |
| 8 <command> | 9 <command> |
| 9 ##set up input files | 10 ##set up input files |
| 10 #set $reference_fasta_filename = "localref.fa" | 11 #set $reference_fasta_filename = "localref.fa" |