# HG changeset patch
# User iuc
# Date 1634832367 0
# Node ID e1f58e6fc619f1fc9b71ee9fed40f7803a724f87
# Parent  6985f04c1585c5a6848d5cad2ac2c6456d59d22b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit 7cca91ac13859592f44b2f16d3aa70c28709af8d"

diff -r 6985f04c1585 -r e1f58e6fc619 cutadapt.xml
--- a/cutadapt.xml	Fri Jul 02 21:20:17 2021 +0000
+++ b/cutadapt.xml	Thu Oct 21 16:06:07 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="cutadapt" name="Cutadapt" version="@TOOL_VERSION@+@GALAXY_TOOL_VERSION@" profile="20.01">
+<tool id="cutadapt" name="Cutadapt" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
     <description>Remove adapter sequences from FASTQ/FASTA</description>
     <macros>
         <import>macros.xml</import>
@@ -175,18 +175,18 @@
             </param>
 
             <when value="single">
-                <param name="input_1" format="fastq.gz,fastq,fastqsanger,fastqsanger.gz,fastqsanger.bz2,fasta" type="data" label="FASTQ/A file" help="Should be of datatype &quot;fastq.gz&quot; or &quot;fasta&quot;" />
+                <param name="input_1" format="@FASTQ_TYPES@" type="data" label="FASTQ/A file" help="Should be of datatype &quot;fastq.gz&quot; or &quot;fasta&quot;" />
                 <expand macro="single_end_options" />
             </when>
 
             <when value="paired">
-                <param name="input_1" format="fastqsanger,fastqsanger.gz,fastqsanger.bz2,fasta" type="data" label="FASTQ/A file #1" help="Should be of datatype &quot;fastq.gz&quot;or &quot;fasta&quot;" />
-                <param name="input_2" format="fastqsanger,fastqsanger.gz,fastqsanger.bz2,fasta" type="data" label="FASTQ/A file #2" help="Should be of datatype &quot;fastq.gz&quot;or &quot;fasta&quot;" />
+                <param name="input_1" format="@FASTQ_TYPES@" type="data" label="FASTQ/A file #1" help="Should be of datatype &quot;fastq.gz&quot;or &quot;fasta&quot;" />
+                <param name="input_2" format="@FASTQ_TYPES@" type="data" label="FASTQ/A file #2" help="Should be of datatype &quot;fastq.gz&quot;or &quot;fasta&quot;" />
                 <expand macro="paired_end_options" />
             </when>
 
             <when value="paired_collection">
-                <param name="input_1" format="fastqsanger,fastqsanger.gz,fastqsanger.bz2,fasta" type="data_collection" collection_type="paired" label="Paired Collection" help="Should be of datatype &quot;fastq.gz&quot; or &quot;fasta&quot;" />
+                <param name="input_1" format="@FASTQ_TYPES@" type="data_collection" collection_type="paired" label="Paired Collection" help="Should be of datatype &quot;fastq.gz&quot; or &quot;fasta&quot;" />
                 <expand macro="paired_end_options" />
             </when>
 
diff -r 6985f04c1585 -r e1f58e6fc619 macros.xml
--- a/macros.xml	Fri Jul 02 21:20:17 2021 +0000
+++ b/macros.xml	Thu Oct 21 16:06:07 2021 +0000
@@ -1,6 +1,7 @@
 <macros>
     <token name="@TOOL_VERSION@">3.4</token>
-    <token name="@GALAXY_TOOL_VERSION@">galaxy1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@FASTQ_TYPES@">fastq.gz,fastq,fasta</token>
     <xml name="edam_ontology">
         <edam_topics>                                                                                  
             <edam_topic>topic_0632</edam_topic>