# HG changeset patch
# User iuc
# Date 1638007707 0
# Node ID 92df7799bf3228423b6e5f29e4624f87906421c3
# Parent 41d784d91ca51149d38192b8c8f9fcf1132d9224
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit 9ec830a98da45d5fb2f92a817c7cd0376504be90"
diff -r 41d784d91ca5 -r 92df7799bf32 cutadapt.xml
--- a/cutadapt.xml Mon Nov 01 12:13:18 2021 +0000
+++ b/cutadapt.xml Sat Nov 27 10:08:27 2021 +0000
@@ -134,7 +134,7 @@
#if str($filter_options.max_expected_errors):
--max-expected-errors=$filter_options.max_expected_errors
#end if
-
+$filter_options.discard_cassava
#if str($read_mod_options.quality_cutoff) != '0':
--quality-cutoff=$read_mod_options.quality_cutoff
@@ -143,6 +143,9 @@
--nextseq-trim=$read_mod_options.nextseq_trim
#end if
$read_mod_options.trim_n
+#if $read_mod_options.strip_suffix != ''
+ --strip-suffix $read_mod_options.strip_suffix
+#end if
#if str($read_mod_options.shorten_options.shorten_values) == 'True':
#if str($read_mod_options.shorten_options.shorten_end) == '3prime'
--length=$read_mod_options.shorten_options.length
@@ -505,11 +508,9 @@
-
-
@@ -526,8 +527,6 @@
-
-
@@ -545,7 +544,6 @@
-
diff -r 41d784d91ca5 -r 92df7799bf32 macros.xml
--- a/macros.xml Mon Nov 01 12:13:18 2021 +0000
+++ b/macros.xml Sat Nov 27 10:08:27 2021 +0000
@@ -1,6 +1,6 @@
3.5
- 0
+ 1
fastq.gz,fastq,fasta