Mercurial > repos > leomrtns > gtdbtk
changeset 3:841e462ac1ee draft default tip
planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/gtdbtk
| author | leomrtns |
|---|---|
| date | Fri, 04 Oct 2019 09:26:46 -0400 |
| parents | c22501876284 |
| children | |
| files | gtdbtk.xml test-data/test_gtdbtk_databases.loc |
| diffstat | 2 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/gtdbtk.xml Tue Sep 17 08:31:00 2019 -0400 +++ b/gtdbtk.xml Fri Oct 04 09:26:46 2019 -0400 @@ -18,7 +18,7 @@ #set $bool_zip = "true" #set $ext = '.gz' #end if - #set $_input_file = "./input/" + $i_file.element_identifier + $ext + #set $_input_file = "./input/" + "'{}'".format($i_file.element_identifier) + $ext ln -s '${i_file}' ${_input_file} && #end for mkdir ./output ./output_zip &&
--- a/test-data/test_gtdbtk_databases.loc Tue Sep 17 08:31:00 2019 -0400 +++ b/test-data/test_gtdbtk_databases.loc Fri Oct 04 09:26:46 2019 -0400 @@ -1,4 +1,5 @@ # This file defines databases and their folder location. Each database is a line with # three columns: value{tab}{name}{/path/to/database-file} # E.g. database100mers{tab}database100mers{tab}/home/user/bracken_databases/database100mers.kmer_distrib -default_db default_db ${__HERE__}/db +#default_db default_db ${__HERE__}/db +default_db default_db /media/deolivl/QIB_deolivl/nobackup/GTDBTK/db