# HG changeset patch
# User leomrtns
# Date 1570195606 14400
# Node ID 841e462ac1ee958bac985f0714d2d41c230572aa
# Parent  c225018762845ef5d2bd060cc23127f86a94c685
planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/gtdbtk

diff -r c22501876284 -r 841e462ac1ee gtdbtk.xml
--- a/gtdbtk.xml	Tue Sep 17 08:31:00 2019 -0400
+++ b/gtdbtk.xml	Fri Oct 04 09:26:46 2019 -0400
@@ -18,7 +18,7 @@
           #set $bool_zip = "true"
           #set $ext = '.gz'
         #end if
-        #set $_input_file = "./input/" + $i_file.element_identifier + $ext
+        #set $_input_file = "./input/" + "'{}'".format($i_file.element_identifier) + $ext
         ln -s '${i_file}' ${_input_file} &&
       #end for
       mkdir ./output ./output_zip &&
diff -r c22501876284 -r 841e462ac1ee test-data/test_gtdbtk_databases.loc
--- a/test-data/test_gtdbtk_databases.loc	Tue Sep 17 08:31:00 2019 -0400
+++ b/test-data/test_gtdbtk_databases.loc	Fri Oct 04 09:26:46 2019 -0400
@@ -1,4 +1,5 @@
 # This file defines databases and their folder location. Each database is a line with 
 # three columns: value{tab}{name}{/path/to/database-file} 
 # E.g. database100mers{tab}database100mers{tab}/home/user/bracken_databases/database100mers.kmer_distrib
-default_db	default_db	${__HERE__}/db
+#default_db	default_db	${__HERE__}/db
+default_db	default_db	/media/deolivl/QIB_deolivl/nobackup/GTDBTK/db