Mercurial > repos > leomrtns > checkm_lineage_wf

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planemo upload
author leomrtns
date Wed, 02 Oct 2019 10:51:58 -0400
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1 github : https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/checkm
2 this tool relies on the DB in a specific, hardcoded location:
3 echo {\"dataRoot\": \"/media/deolivl/QIB_deolivl/nobackup/GTDBTK\", \"remoteManifestURL\": \"https://data.ace.uq.edu.au/public/CheckM_databases/\", \"manifestType\": \"CheckM\", \"localManifestName\": \".dmanifest\", \"remoteManifestName\": \".dmanifest\"} > \${CONDA_PREFIX}/lib/python2.7/site-packages/checkm/DATA_CONFIG &&
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