# HG changeset patch
# User lecorguille
# Date 1556615619 14400
# Node ID 6f9224f32a342dd2535eccba5e956eca5598ecf3
# Parent  ceff49826bf21f3164cabb27720977a2d2c377a4
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 60ad498b7bd01542a69d6603160d36494c97077a

diff -r ceff49826bf2 -r 6f9224f32a34 README.rst
--- a/README.rst	Mon Apr 29 06:08:03 2019 -0400
+++ b/README.rst	Tue Apr 30 05:13:39 2019 -0400
@@ -24,6 +24,10 @@
 
 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS
 
+**Version 3.4.4.1 - 30/04/2019**
+
+- BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms.
+
 **Version 3.4.4.0 - 08/02/2019**
 
 - UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_)
diff -r ceff49826bf2 -r 6f9224f32a34 abims_xcms_xcmsSet.xml
--- a/abims_xcms_xcmsSet.xml	Mon Apr 29 06:08:03 2019 -0400
+++ b/abims_xcms_xcmsSet.xml	Tue Apr 30 05:13:39 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="abims_xcms_xcmsSet" name="xcms findChromPeaks (xcmsSet)" version="@WRAPPER_VERSION@.0">
+<tool id="abims_xcms_xcmsSet" name="xcms findChromPeaks (xcmsSet)" version="@WRAPPER_VERSION@.1">
     <description>Chromatographic peak detection</description>
 
     <macros>
@@ -484,6 +484,10 @@
 
 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS
 
+**Version 3.4.4.1 - 30/04/2019**
+
+- BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms.
+
 **Version 3.4.4.0 - 08/02/2019**
 
 - UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_)
diff -r ceff49826bf2 -r 6f9224f32a34 xcms_xcmsSet.r
--- a/xcms_xcmsSet.r	Mon Apr 29 06:08:03 2019 -0400
+++ b/xcms_xcmsSet.r	Tue Apr 30 05:13:39 2019 -0400
@@ -105,9 +105,9 @@
 # Create a sampleMetada file
 sampleNamesList <- getSampleMetadata(xdata=xdata, sampleMetadataOutput="sampleMetadata.tsv")
 
-cat("\t\t\tCompute and Store TIC and BPI\n")
-chromTIC = chromatogram(xdata, aggregationFun = "sum")
-chromBPI = chromatogram(xdata, aggregationFun = "max")
+#cat("\t\t\tCompute and Store TIC and BPI\n")
+#chromTIC = chromatogram(xdata, aggregationFun = "sum")
+#chromBPI = chromatogram(xdata, aggregationFun = "max")
 
 cat("\n\n")