Mercurial > repos > lecorguille > xcms_xcmsset
diff abims_xcms_xcmsSet.xml @ 5:b9a87af62223 draft
planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty
| author | lecorguille |
|---|---|
| date | Wed, 06 Apr 2016 03:22:15 -0400 |
| parents | 4509e9dd03e4 |
| children | 60f6c208ca16 |
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--- a/abims_xcms_xcmsSet.xml Mon Feb 22 16:59:10 2016 -0500 +++ b/abims_xcms_xcmsSet.xml Wed Apr 06 03:22:15 2016 -0400 @@ -4,9 +4,9 @@ <requirements> <requirement type="package" version="3.1.2">R</requirement> - <requirement type="binary">Rscript</requirement> - <requirement type="package" version="1.44.0">xcms</requirement> - <requirement type="package" version="2.2.0">xcms_w4m_script</requirement> + <requirement type="package" version="0.4_1">r-snow</requirement> + <requirement type="package" version="1.44.0">bioconductor-xcms</requirement> + <requirement type="package" version="1.1_4">r-batch</requirement> </requirements> <stdio> @@ -14,7 +14,7 @@ </stdio> <command><![CDATA[ - xcms.r + $__tool_directory__/xcms.r #if $inputs.input == "lib": library $__app__.config.user_library_import_dir/$__user_email__/$inputs.library #elif $inputs.input == "zip_file": @@ -192,15 +192,15 @@ <tests> <test> - <param name="inputs.input" value="zip_file" /> - <param name="inputs.zip_file" value="sacuri.zip" /> - <param name="methods.method" value="matchedFilter" /> - <param name="methods.step" value="0.01" /> - <param name="methods.fwhm" value="4" /> - <param name="methods.options_m.option" value="show" /> - <param name="methods.options_m.max" value="50" /> - <param name="methods.options_m.snthresh" value="1" /> - <param name="methods.options_m.steps" value="2" /> + <param name="inputs|input" value="zip_file" /> + <param name="inputs|zip_file" value="sacuri.zip" ftype="zip" /> + <param name="methods|method" value="matchedFilter" /> + <param name="methods|step" value="0.01" /> + <param name="methods|fwhm" value="4" /> + <param name="methods|options_m|option" value="show" /> + <param name="methods|options_m|max" value="50" /> + <param name="methods|options_m|snthresh" value="1" /> + <param name="methods|options_m|steps" value="2" /> <!--<output name="xsetRData" file="xset.RData" />--> <!--<output name="sampleMetadata" file="sampleMetadata.tsv" />--> <!--<output name="ticsRawPdf" file="xset.TICs_raw.pdf" />-->