Mercurial > repos > lecorguille > xcms_xcmsset

comparison abims_xcms_xcmsSet.xml @ 46:bea0471f41b9 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4dc5751176d47d41fa1dec33eb443e335a1a316f
author workflow4metabolomics
date Fri, 26 Jul 2019 10:26:01 -0400
parents 6f9224f32a34
children 7fef3b369795
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395 Description 395 Description
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398 This tool is used for preprocessing data from multiple LC/MS files (NetCDF, mzXML and mzData formats) using the xcms_ R package. It extracts ions from each sample independently, and using a statistical model, peaks are filtered and integrated. 398 This tool is used for preprocessing data from multiple LC/MS files (NetCDF, mzXML and mzData formats) using the xcms_ R package.
399 A tutorial on how to perform xcms preprocessing is available here_. 399 It extracts ions from each sample independently, and using a statistical model, peaks are filtered and integrated.
400 A tutorial on how to perform xcms preprocessing is available as GTN_ (Galaxy Training Network).
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401 .. _xcms: https://bioconductor.org/packages/release/bioc/html/xcms.html 402 .. _xcms: https://bioconductor.org/packages/release/bioc/html/xcms.html
402 .. _here: http://web11.sb-roscoff.fr/download/w4m/howto/w4m_HowToPerformXcmsPreprocessing_v02.pdf 403 .. _GTN: https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/lcms/tutorial.html
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404 405
405 ----------------- 406 -----------------
406 Workflow position 407 Workflow position
407 ----------------- 408 -----------------