Mercurial > repos > lecorguille > xcms_xcmsset

comparison xcms_xcmsSet.r @ 43:a8f0dd2aff5a draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f0d42bca2f34c58c04b55e5990058d479c0ae639
author lecorguille
date Fri, 08 Feb 2019 09:56:35 -0500
parents e8d7395a70b2
children ceff49826bf2
comparison
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42:44b9b9ef2691 43:a8f0dd2aff5a
10 cat("\tSESSION INFO\n") 10 cat("\tSESSION INFO\n")
11 11
12 #Import the different functions 12 #Import the different functions
13 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) } 13 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) }
14 source_local("lib.r") 14 source_local("lib.r")
15 source_local("lib-xcms3.x.x.r")
16 15
17 pkgs <- c("xcms","batch") 16 pkgs <- c("xcms","batch")
18 loadAndDisplayPackages(pkgs) 17 loadAndDisplayPackages(pkgs)
19 cat("\n\n"); 18 cat("\n\n");
20 19