Mercurial > repos > lecorguille > xcms_xcmsset

comparison planemo_test.sh @ 10:00ef27ba8abd draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author lecorguille
date Mon, 25 Apr 2016 11:08:53 -0400
parents 9c3e676f7c6c
children 6d297efb82bc
comparison
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9:32cbf37cfee2 10:00ef27ba8abd
1 planemo conda_init 1 # Example of planemo command to launch test
2 planemo conda_install .
3 planemo test --install_galaxy --conda_dependency_resolution --galaxy_branch "dev"
4 2
5 #All 2 test(s) executed passed. 3 # Note: --galaxy_branch "dev" is set to deal with zip file
6 #abims_xcms_xcmsSet[0]: passed
7 #abims_xcms_xcmsSet[1]: passed
8 4
9 5
10 6 # -- Use of installed package environments
11 7 # after having installing package on a local galaxy instance
12 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh 8 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
13 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh 9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh
14 planemo test --install_galaxy --galaxy_branch "dev" 10 planemo test --install_galaxy --galaxy_branch "dev"
15 11
16 #All 2 test(s) executed passed. 12 #All 2 test(s) executed passed.
17 #abims_xcms_xcmsSet[0]: passed 13 #abims_xcms_xcmsSet[0]: passed
18 #abims_xcms_xcmsSet[1]: passed 14 #abims_xcms_xcmsSet[1]: passed
15
16
17 # -- Use of conda dependencies
18 planemo conda_init --conda_prefix /tmp/mc
19 planemo conda_install --conda_prefix /tmp/mc .
20 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev"
21
22 #All 2 test(s) executed passed.
23 #abims_xcms_xcmsSet[0]: passed
24 #abims_xcms_xcmsSet[1]: passed
25
26
27 # -- Use of shed_test
28 planemo shed_test --install_galaxy -t testtoolshed --galaxy_branch ="dev"
29
30 #All 2 test(s) executed passed.
31 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_xcmsset/2.0.8[0]: passed
32 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_xcmsset/2.0.8[1]: passed
33