Mercurial > repos > lecorguille > xcms_xcmsset
annotate macros.xml @ 52:3d01d97f7335 draft default tip
planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit 95721ced8347c09e79340e6d67ecb41c5cc64163
author | workflow4metabolomics |
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date | Mon, 03 Feb 2025 14:41:55 +0000 |
parents | e8d7395a70b2 |
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1 <?xml version="1.0"?> |
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2 <macros> |
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3 <xml name="stdio"> |
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4 <stdio> |
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5 <exit_code range="1" level="fatal" /> |
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6 </stdio> |
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7 </xml> |
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8 |
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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f01148783819c37e474790dbd56619862960448a
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9 <!-- COMMAND --> |
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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f01148783819c37e474790dbd56619862960448a
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10 <token name="@COMMAND_RSCRIPT@">LC_ALL=C Rscript $__tool_directory__/</token> |
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11 |
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12 <token name="@COMMAND_LOG_EXIT@"> |
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13 ; |
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14 return=\$?; |
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15 cat 'log.txt'; |
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16 sh -c "exit \$return" |
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17 </token> |
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18 |
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19 <!-- INPUT_VALIDATORS --> |
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20 <xml name="input_validator_range_integer"> |
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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7b226c3ba91a3cf654ec1c14b3ef85090968bb0f
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21 <validator type="regex" message="The format is 'min,max'" >[0-9]+ *, *[0-9]+</validator> |
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22 </xml> |
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23 |
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24 <xml name="input_validator_range_float"> |
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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7b226c3ba91a3cf654ec1c14b3ef85090968bb0f
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25 <validator type="regex" message="The format is 'min,max'" >[0-9]+\.?[0-9]* *, *[0-9]+\.?[0-9]*</validator> |
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26 </xml> |
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27 |
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28 <xml name="input_validator_list_integer"> |
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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7b226c3ba91a3cf654ec1c14b3ef85090968bb0f
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29 <validator type="regex" message="The format is '1,2,4,6'" >[0-9, ]+</validator> |
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30 </xml> |
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31 |
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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 49203f8a5271fa5e6bb889e907df71ebf7757309
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33 <token name="@INPUT_IMAGE_LABEL@">RData file</token> |
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34 <token name="@INPUT_IMAGE_HELP@">It contains a xcms3::XCMSnExp object (named xdata)</token> |
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35 |
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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 960f403303e1691bdd6137c46895feb333b36a82
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36 |
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37 <!-- MISC --> |
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38 <token name="@HELP_AUTHORS_WRAPPERS@"> |
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39 |
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40 .. class:: infomark |
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41 |
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42 **Galaxy integration** ABiMS TEAM - SU/CNRS - Station biologique de Roscoff and Yann Guitton - LABERCA |
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43 Part of Workflow4Metabolomics.org [W4M] |
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44 |
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45 | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool. |
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46 |
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47 </token> |
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48 |
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49 <xml name="citation_w4m"> |
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50 <citation type="doi">10.1093/bioinformatics/btu813</citation> |
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51 </xml> |
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52 </macros> |