Mercurial > repos > lecorguille > xcms_summary
diff test-data/summary.html @ 9:dc6b3773f8de draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 1bf8810447bdd1268f67bfb64ead95ce82d8d85c
| author | lecorguille |
|---|---|
| date | Fri, 08 Apr 2016 06:18:24 -0400 |
| parents | 8bc6408551e8 |
| children | 1ea35f88f3c4 |
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--- a/test-data/summary.html Tue Mar 22 17:00:35 2016 -0400 +++ b/test-data/summary.html Fri Apr 08 06:18:24 2016 -0400 @@ -4,26 +4,23 @@ <meta http-equiv='Content-Type' content='text/html; charset=UTF-8' /> <title>[W4M] XCMS analysis summary</title> <style> -table, tr, td, th { border: 1px solid #000000; border-collapse:collapse; } -td,th { padding: 5px; padding-right: 12px; } -th { background: #898989; text-align:left;color: white;} +table { min-width: 500px; border:1px solid #D6B161; border-collapse:collapse;} +th { background: #898989; text-align:left;} +tr { border: 1px solid #000000 } h2 { color: #FFA212; } ul li { margin-bottom:10px; } </style> </HEAD> <BODY> -<div><h1>___ XCMS analysis summary using Workflow4Metabolomics ___</h1> -</div> +<h1>___ XCMS analysis summary using Workflow4Metabolomics ___</h1> <h2>Samples used:</h2> -<div><table> +<table <tr><th>sample</th><th>filename</th></tr> -<tr> <td> HU_neg_051 </td> <td> sacuri//bio2/HU_neg_051.mzXML </td> </tr><tr> <td> HU_neg_060 </td> <td> sacuri//bio2/HU_neg_060.mzXML </td> </tr><tr> <td> HU_neg_017 </td> <td> sacuri//bio/HU_neg_017.mzXML </td> </tr><tr> <td> HU_neg_028 </td> <td> sacuri//bio/HU_neg_028.mzXML </td> </tr><tr> <td> Blanc04 </td> <td> sacuri//blank/Blanc04.mzXML </td> </tr><tr> <td> Blanc06 </td> <td> sacuri//blank/Blanc06.mzXML </td> </tr> +<tr><td> HU_neg_051 </td><td> sacuri//bio2/HU_neg_051.mzXML </td></tr><tr><td> HU_neg_060 </td><td> sacuri//bio2/HU_neg_060.mzXML </td></tr><tr><td> HU_neg_017 </td><td> sacuri//bio/HU_neg_017.mzXML </td></tr><tr><td> HU_neg_028 </td><td> sacuri//bio/HU_neg_028.mzXML </td></tr><tr><td> Blanc04 </td><td> sacuri//blank/Blanc04.mzXML </td></tr><tr><td> Blanc06 </td><td> sacuri//blank/Blanc06.mzXML </td></tr> </table> - -</div> <h2>Function launched:</h2> -<div><table> -<tr><th>timestamp<sup>***</sup></th><th>function</th><th>argument</th><th>value</th></tr> +<table> +<tr><th>timestamp<br />(ymd-h:m:s)</th><th>function</th><th>argument</th><th>value</th></tr> <tr><td rowspan='4'>151221-16:20:54</td><td rowspan='4'>xcmsSet</td> <td>nSlaves</td><td>1</td></tr> <tr><td>method</td><td>matchedFilter</td></tr> @@ -38,10 +35,8 @@ <tr><td rowspan='1'>151221-16:37:20</td><td rowspan='1'>fillPeaks</td> <td>method</td><td>chrom</td></tr> </table> -<br/><sup>***</sup>timestamp format: yymmdd-hh:mm:ss -</div> -<h2>Informations about the xcmsSet object:</h2> -<div><pre> +<h2>Information about the xcmsSet object:</h2> +<pre> An "xcmsSet" object with 6 samples Time range: 16.3-1138.9 seconds (0.3-19 minutes) @@ -54,9 +49,9 @@ step = 0.01 Memory usage: 0.421 MB -</pre></div> +</pre> <h2>Citations:</h2> -<div><ul> +<ul> <li>To cite the <b>XCMS</b> package in publications use: <ul> <li>Smith, C.A. and Want, E.J. and O'Maille, G. and Abagyan,R. and Siuzdak, G.XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching and identification, Analytical Chemistry, 78:779-787 (2006)</li> @@ -74,6 +69,6 @@ <li>Franck Giacomoni, Gildas Le Corguillé, Misharl Monsoor, Marion Landi, Pierre Pericard, Mélanie Pétéra, Christophe Duperier, Marie Tremblay-Franco, Jean-François Martin, Daniel Jacob, Sophie Goulitquer, Etienne A. Thévenot and Christophe Caron (2014). Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. Bioinformatics doi:10.1093/bioinformatics/btu813</li> </ul> </li> -</ul></div> +</ul> </BODY> </HTML>