Mercurial > repos > lecorguille > xcms_summary

comparison abims_xcms_summary.xml @ 27:33694028a409 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit bff1445c9b00ccdbe05ee3dc6ed24221033384b9
author lecorguille
date Tue, 24 Oct 2017 11:48:55 -0400
parents e6a6503d7d6d
children 8ad83969888b
comparison
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26:e6a6503d7d6d 27:33694028a409
49 49
50 ============ 50 ============
51 Xcms.summary 51 Xcms.summary
52 ============ 52 ============
53 53
54 -----------
55 Description 54 Description
56 ----------- 55 -----------
57 56
58 This tool provide a HTML summary which summarizes your analysis using the [W4M] XCMS and CAMERA tools 57 This tool provide a HTML summary which summarizes your analysis using the [W4M] XCMS and CAMERA tools
59 58
60 ----------------- 59
61 Workflow position 60 Workflow position
62 ----------------- 61 -----------------
63 62
64 **Upstream tools** 63 **Upstream tools**
65 64
66 ========================= ================= ===================== ========== 65 +------------------------+------------------+----------------------+------------+
67 Name output file format parameter 66 | Name | output file | format | parameter |
68 ========================= ================= ===================== ========== 67 +========================+==================+======================+============+
69 xcms.xcmsSet xset.RData rdata.xcms.raw RData file 68 | xcms.xcmsSet | xset.RData | rdata.xcms.raw | RData file |
70 ------------------------- ----------------- --------------------- ---------- 69 +------------------------+------------------+----------------------+------------+
71 xcms.group xset.RData rdata.xcms.group RData file 70 | xcms.group | xset.RData | rdata.xcms.group | RData file |
72 ------------------------- ----------------- --------------------- ---------- 71 +------------------------+------------------+----------------------+------------+
73 xcms.retcor xset.RData rdata.xcms.retcor RData file 72 | xcms.retcor | xset.RData | rdata.xcms.retcor | RData file |
74 ------------------------- ----------------- --------------------- ---------- 73 +------------------------+------------------+----------------------+------------+
75 xcms.fillpeaks xset.RData rdata.xcms.fillpeaks RData file 74 | xcms.fillpeaks | xset.RData | rdata.xcms.fillpeaks | RData file |
76 ------------------------- ----------------- --------------------- ---------- 75 +------------------------+------------------+----------------------+------------+
77 CAMERA.annotate xset.RData rdata.camera.* RData file 76 | CAMERA.annotate | xset.RData | rdata.camera.* | RData file |
78 ========================= ================= ===================== ========== 77 +------------------------+------------------+----------------------+------------+
79 78
80 79
81 .. image:: xcms_summary_workflow.png 80 .. image:: xcms_summary_workflow.png
82 81
83 --------------------------------------------------- 82 ---------------------------------------------------