annotate README.rst @ 43:297ee37840ef draft

"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 50478425b4773ebcb393c0e31f1e622b7406dcbb"
author workflow4metabolomics
date Thu, 24 Sep 2020 08:08:25 +0000
parents 5d59db39939a
children 9df658383852
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
6260844b9a17 planemo upload
lecorguille
parents:
diff changeset
1
6260844b9a17 planemo upload
lecorguille
parents:
diff changeset
2 Changelog/News
6260844b9a17 planemo upload
lecorguille
parents:
diff changeset
3 --------------
6260844b9a17 planemo upload
lecorguille
parents:
diff changeset
4
40
00be6777edc5 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a5136bfc124956893f4f0c91808d1c0d78c4ea01
lecorguille
parents: 39
diff changeset
5 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS
39
1d2cc6c87acf planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f0d42bca2f34c58c04b55e5990058d479c0ae639
lecorguille
parents: 31
diff changeset
6
42
5d59db39939a "planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7234c5fb8350990733e882693248c0433eee5ff8"
workflow4metabolomics
parents: 41
diff changeset
7 **Version 3.6.1+galaxy1 - 05/04/2020**
5d59db39939a "planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7234c5fb8350990733e882693248c0433eee5ff8"
workflow4metabolomics
parents: 41
diff changeset
8
5d59db39939a "planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7234c5fb8350990733e882693248c0433eee5ff8"
workflow4metabolomics
parents: 41
diff changeset
9 - UPGRADE: upgrade the CAMERA version from 1.38.0 to 1.42.0
5d59db39939a "planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7234c5fb8350990733e882693248c0433eee5ff8"
workflow4metabolomics
parents: 41
diff changeset
10
5d59db39939a "planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7234c5fb8350990733e882693248c0433eee5ff8"
workflow4metabolomics
parents: 41
diff changeset
11 - BUGFIX: "Error in chromPeaks(from)[, "is_filled"] : subscript out of bounds"
5d59db39939a "planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7234c5fb8350990733e882693248c0433eee5ff8"
workflow4metabolomics
parents: 41
diff changeset
12
41
a7db001bfdaf "planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f1caf2a3bf23cf319a75dd12c86402555dd02617"
workflow4metabolomics
parents: 40
diff changeset
13 **Version 3.6.1.0 - 03/09/2019**
a7db001bfdaf "planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f1caf2a3bf23cf319a75dd12c86402555dd02617"
workflow4metabolomics
parents: 40
diff changeset
14
a7db001bfdaf "planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f1caf2a3bf23cf319a75dd12c86402555dd02617"
workflow4metabolomics
parents: 40
diff changeset
15 - UPGRADE: upgrade the xcms version from 3.4.4 to 3.6.1 (see XCMS News_)
a7db001bfdaf "planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f1caf2a3bf23cf319a75dd12c86402555dd02617"
workflow4metabolomics
parents: 40
diff changeset
16
40
00be6777edc5 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a5136bfc124956893f4f0c91808d1c0d78c4ea01
lecorguille
parents: 39
diff changeset
17 **Version 3.4.4.0 - 08/02/2019**
00be6777edc5 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a5136bfc124956893f4f0c91808d1c0d78c4ea01
lecorguille
parents: 39
diff changeset
18
00be6777edc5 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a5136bfc124956893f4f0c91808d1c0d78c4ea01
lecorguille
parents: 39
diff changeset
19 - UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_)
39
1d2cc6c87acf planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f0d42bca2f34c58c04b55e5990058d479c0ae639
lecorguille
parents: 31
diff changeset
20
31
0b5521b78c92 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 49203f8a5271fa5e6bb889e907df71ebf7757309
lecorguille
parents: 30
diff changeset
21 **Version 3.0.0.0 - 14/02/2018**
0b5521b78c92 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 49203f8a5271fa5e6bb889e907df71ebf7757309
lecorguille
parents: 30
diff changeset
22
0b5521b78c92 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 49203f8a5271fa5e6bb889e907df71ebf7757309
lecorguille
parents: 30
diff changeset
23 - UPGRADE: upgrade the xcms version from 1.46.0 to 3.0.0. So refactoring of a lot of underlying codes and methods
0b5521b78c92 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 49203f8a5271fa5e6bb889e907df71ebf7757309
lecorguille
parents: 30
diff changeset
24
0b5521b78c92 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 49203f8a5271fa5e6bb889e907df71ebf7757309
lecorguille
parents: 30
diff changeset
25 - IMPROVEMENT: the tool now shows all the parameters and not only those which were setted.
0b5521b78c92 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 49203f8a5271fa5e6bb889e907df71ebf7757309
lecorguille
parents: 30
diff changeset
26
0b5521b78c92 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 49203f8a5271fa5e6bb889e907df71ebf7757309
lecorguille
parents: 30
diff changeset
27
30
17562a6799a1 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7b226c3ba91a3cf654ec1c14b3ef85090968bb0f
lecorguille
parents: 29
diff changeset
28 **Version 1.0.4 - 13/02/2018**
17562a6799a1 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7b226c3ba91a3cf654ec1c14b3ef85090968bb0f
lecorguille
parents: 29
diff changeset
29
17562a6799a1 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7b226c3ba91a3cf654ec1c14b3ef85090968bb0f
lecorguille
parents: 29
diff changeset
30 - UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0
17562a6799a1 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 7b226c3ba91a3cf654ec1c14b3ef85090968bb0f
lecorguille
parents: 29
diff changeset
31
31
0b5521b78c92 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 49203f8a5271fa5e6bb889e907df71ebf7757309
lecorguille
parents: 30
diff changeset
32
17
a2908411620e planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 22c4e92909198328fc7439ff47e4546a273eb907
lecorguille
parents: 14
diff changeset
33 **Version 1.0.3 - 03/02/2017**
a2908411620e planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 22c4e92909198328fc7439ff47e4546a273eb907
lecorguille
parents: 14
diff changeset
34
a2908411620e planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 22c4e92909198328fc7439ff47e4546a273eb907
lecorguille
parents: 14
diff changeset
35 - IMPROVEMENT: xcms.summary can deal with merged individual data
a2908411620e planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 22c4e92909198328fc7439ff47e4546a273eb907
lecorguille
parents: 14
diff changeset
36
31
0b5521b78c92 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 49203f8a5271fa5e6bb889e907df71ebf7757309
lecorguille
parents: 30
diff changeset
37
14
c575dc541049 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4
lecorguille
parents: 10
diff changeset
38 **Version 1.0.2 - 06/07/2016**
c575dc541049 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4
lecorguille
parents: 10
diff changeset
39
c575dc541049 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4
lecorguille
parents: 10
diff changeset
40 - UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0
c575dc541049 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4
lecorguille
parents: 10
diff changeset
41
31
0b5521b78c92 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 49203f8a5271fa5e6bb889e907df71ebf7757309
lecorguille
parents: 30
diff changeset
42
9
dc6b3773f8de planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 1bf8810447bdd1268f67bfb64ead95ce82d8d85c
lecorguille
parents: 0
diff changeset
43 **Version 1.0.1 - 04/04/2016**
dc6b3773f8de planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 1bf8810447bdd1268f67bfb64ead95ce82d8d85c
lecorguille
parents: 0
diff changeset
44
dc6b3773f8de planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 1bf8810447bdd1268f67bfb64ead95ce82d8d85c
lecorguille
parents: 0
diff changeset
45 - TEST: refactoring to pass planemo test using conda dependencies
dc6b3773f8de planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 1bf8810447bdd1268f67bfb64ead95ce82d8d85c
lecorguille
parents: 0
diff changeset
46
dc6b3773f8de planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 1bf8810447bdd1268f67bfb64ead95ce82d8d85c
lecorguille
parents: 0
diff changeset
47
0
6260844b9a17 planemo upload
lecorguille
parents:
diff changeset
48 **Version 1.0.0 - 10/02/2016**
6260844b9a17 planemo upload
lecorguille
parents:
diff changeset
49
6260844b9a17 planemo upload
lecorguille
parents:
diff changeset
50 - NEW: Create a summary of XCMS analysis