# HG changeset patch
# User lecorguille
# Date 1556615993 14400
# Node ID db348cb326187765d908c959d54e8e5846a37387
# Parent  221a8c6de94a2806de97653a1cfbdeae168bacde
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 60ad498b7bd01542a69d6603160d36494c97077a

diff -r 221a8c6de94a -r db348cb32618 README.rst
--- a/README.rst	Mon Apr 29 06:12:54 2019 -0400
+++ b/README.rst	Tue Apr 30 05:19:53 2019 -0400
@@ -4,6 +4,10 @@
 
 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS
 
+**Version 3.4.4.1 - 30/04/2019**
+
+- BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms.
+
 **Version 3.4.4.0 - 08/02/2019**
 
 - UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_)
diff -r 221a8c6de94a -r db348cb32618 abims_xcms_retcor.xml
--- a/abims_xcms_retcor.xml	Mon Apr 29 06:12:54 2019 -0400
+++ b/abims_xcms_retcor.xml	Tue Apr 30 05:19:53 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="abims_xcms_retcor" name="xcms adjustRtime (retcor)" version="@WRAPPER_VERSION@.0">
+<tool id="abims_xcms_retcor" name="xcms adjustRtime (retcor)" version="@WRAPPER_VERSION@.1">
 
     <description>Retention Time Correction</description>
 
@@ -308,6 +308,10 @@
 
 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS
 
+**Version 3.4.4.1 - 30/04/2019**
+
+- BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms.
+
 **Version 3.4.4.0 - 08/02/2019**
 
 - UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_)
diff -r 221a8c6de94a -r db348cb32618 xcms_retcor.r
--- a/xcms_retcor.r	Mon Apr 29 06:12:54 2019 -0400
+++ b/xcms_retcor.r	Tue Apr 30 05:19:53 2019 -0400
@@ -66,9 +66,9 @@
 print(adjustRtimeParam)
 xdata <- adjustRtime(xdata, param=adjustRtimeParam)
 
-cat("\t\t\tCompute and Store TIC and BPI\n")
-chromTIC_adjusted = chromatogram(xdata, aggregationFun = "sum")
-chromBPI_adjusted = chromatogram(xdata, aggregationFun = "max")
+#cat("\t\t\tCompute and Store TIC and BPI\n")
+#chromTIC_adjusted = chromatogram(xdata, aggregationFun = "sum")
+#chromBPI_adjusted = chromatogram(xdata, aggregationFun = "max")
 
 cat("\n\n")