# HG changeset patch # User lecorguille # Date 1461596973 14400 # Node ID 14242e3169539a1d5f337d839105932e211948fb # Parent af49b053b3b2337b6cb111d70ebc2ab99d33ee51 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29 diff -r af49b053b3b2 -r 14242e316953 abims_xcms_retcor.xml --- a/abims_xcms_retcor.xml Fri Apr 08 10:32:57 2016 -0400 +++ b/abims_xcms_retcor.xml Mon Apr 25 11:09:33 2016 -0400 @@ -99,7 +99,7 @@ - + + + + + + + + + + + + + + + + + + + + + + diff -r af49b053b3b2 -r 14242e316953 planemo_test.sh --- a/planemo_test.sh Fri Apr 08 10:32:57 2016 -0400 +++ b/planemo_test.sh Mon Apr 25 11:09:33 2016 -0400 @@ -1,11 +1,10 @@ -planemo conda_init -planemo conda_install . -planemo test --install_galaxy --conda_dependency_resolution --galaxy_branch "dev" +# Example of planemo command to launch test -#All 1 test(s) executed passed. -#abims_xcms_retcor[0]: passed +# Note: --galaxy_branch "dev" is set to deal with zip file +# -- Use of installed package environments +# after having installing package on a local galaxy instance source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh planemo test --install_galaxy --galaxy_branch "dev" @@ -14,6 +13,16 @@ #abims_xcms_retcor[0]: passed +# -- Use of conda dependencies +planemo conda_init --conda_prefix /tmp/mc +planemo conda_install --conda_prefix /tmp/mc . +planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev" + +#All 1 test(s) executed passed. +#abims_xcms_retcor[0]: passed + + +# -- Use of shed_test planemo shed_test --install_galaxy --galaxy_branch "dev" -t testtoolshed #All 1 test(s) executed passed. -#testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/2.0.6[0]: passed \ No newline at end of file +#testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/2.0.6[0]: passed diff -r af49b053b3b2 -r 14242e316953 test-data/faahKO.xset.group.RData Binary file test-data/faahKO.xset.group.RData has changed diff -r af49b053b3b2 -r 14242e316953 test-data/faahKO_reduce.zip Binary file test-data/faahKO_reduce.zip has changed diff -r af49b053b3b2 -r 14242e316953 test-data/sacuri_dir_root.zip Binary file test-data/sacuri_dir_root.zip has changed diff -r af49b053b3b2 -r 14242e316953 test-data/xset.group.RData Binary file test-data/xset.group.RData has changed