Mercurial > repos > lecorguille > xcms_retcor
diff abims_xcms_retcor.xml @ 10:c7ae34138ee2 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 960f403303e1691bdd6137c46895feb333b36a82
| author | lecorguille |
|---|---|
| date | Mon, 04 Jul 2016 08:44:13 -0400 |
| parents | 14242e316953 |
| children | aee5648dc924 |
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--- a/abims_xcms_retcor.xml Mon Apr 25 11:09:33 2016 -0400 +++ b/abims_xcms_retcor.xml Mon Jul 04 08:44:13 2016 -0400 @@ -32,9 +32,9 @@ plottype $methods.options.plottype #end if #end if - #if $zip_file: - zipfile $zip_file - #end if + + @COMMAND_ZIPFILE_LOAD@ + @COMMAND_LOG_EXIT@ ]]></command> @@ -81,8 +81,9 @@ </conditional> </when> </conditional> - <!-- To pass planemo test --> - <param name="zip_file" type="data" format="no_unzip.zip,zip" label="Zip file" help="Use only if you get a message which say that your original zip file have been deleted on the server." /> + + <expand macro="zipfile_load"/> + </inputs> <outputs> @@ -109,7 +110,8 @@ <param name="methods|options|span" value="0.2"/> <param name="methods|options|family" value="gaussian"/> <param name="methods|options|plottype" value="deviation"/> - <param name="zip_file" value="sacuri_dir_root.zip" ftype="zip" /> + <param name="zipfile_load_conditional|zipfile_load_select" value="yes" /> + <param name="zipfile_load_conditional|zip_file" value="sacuri_dir_root.zip" ftype="zip" /> <output name="log"> <assert_contents> <has_text text="object with 4 samples" /> @@ -131,7 +133,8 @@ <param name="methods|options|span" value="0.2"/> <param name="methods|options|family" value="gaussian"/> <param name="methods|options|plottype" value="deviation"/> - <param name="zip_file" value="faahKO_reduce.zip" ftype="zip" /> + <param name="zipfile_load_conditional|zipfile_load_select" value="yes" /> + <param name="zipfile_load_conditional|zip_file" value="faahKO_reduce.zip" ftype="zip" /> <output name="log"> <assert_contents> <has_text text="object with 4 samples" />