Mercurial > repos > lecorguille > xcms_retcor

diff lib.r @ 25:b8be2b25957d draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 5583baab62c0f17cabbfe93ba4f2522e8df9b36b
author lecorguille
date Thu, 30 Mar 2017 08:34:51 -0400
parents 411d2b9ea412
children 30410a052ab3
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--- a/lib.r	Wed Mar 22 16:06:13 2017 -0400
+++ b/lib.r	Thu Mar 30 08:34:51 2017 -0400
@@ -476,9 +476,7 @@
 
 
 # This function get the raw file path from the arguments
-getRawfilePathFromArguments <- function(listArguments) {
-    zipfile = NULL
-    singlefile = NULL
+getRawfilePathFromArguments <- function(singlefile, zipfile, listArguments) {    
     if (!is.null(listArguments[["zipfile"]]))           zipfile = listArguments[["zipfile"]]
     if (!is.null(listArguments[["zipfilePositive"]]))   zipfile = listArguments[["zipfilePositive"]]
     if (!is.null(listArguments[["zipfileNegative"]]))   zipfile = listArguments[["zipfileNegative"]]