Mercurial > repos > lecorguille > xcms_retcor
comparison abims_xcms_retcor.xml @ 22:411d2b9ea412 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 87dc789d7cd70a3733a1ad0b5a427f4d5905795d
| author | lecorguille |
|---|---|
| date | Wed, 01 Mar 2017 16:57:27 -0500 |
| parents | 51b9f9452794 |
| children | 30410a052ab3 |
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| 21:51b9f9452794 | 22:411d2b9ea412 |
|---|---|
| 80 </when> | 80 </when> |
| 81 </conditional> | 81 </conditional> |
| 82 </when> | 82 </when> |
| 83 </conditional> | 83 </conditional> |
| 84 | 84 |
| 85 <expand macro="file_load"/> | 85 <expand macro="input_file_load"/> |
| 86 | 86 |
| 87 </inputs> | 87 </inputs> |
| 88 | 88 |
| 89 <outputs> | 89 <outputs> |
| 90 <data name="xsetRData" format="rdata.xcms.retcor" label="${image.name[:-6]}.retcor.RData" /> | 90 <data name="xsetRData" format="rdata.xcms.retcor" label="${image.name[:-6]}.retcor.RData" /> |
| 131 <param name="methods|missing" value="1"/> | 131 <param name="methods|missing" value="1"/> |
| 132 <param name="methods|options|option" value="show"/> | 132 <param name="methods|options|option" value="show"/> |
| 133 <param name="methods|options|span" value="0.2"/> | 133 <param name="methods|options|span" value="0.2"/> |
| 134 <param name="methods|options|family" value="gaussian"/> | 134 <param name="methods|options|family" value="gaussian"/> |
| 135 <param name="methods|options|plottype" value="deviation"/> | 135 <param name="methods|options|plottype" value="deviation"/> |
| 136 <param name="file_load_conditional|file_load_select" value="yes" /> | 136 <expand macro="test_file_load_zip"/> |
| 137 <param name="file_load_conditional|inputs|input" value="zip_file" /> | |
| 138 <param name="file_load_conditional|inputs|zip_file" value="faahKO_reduce.zip" ftype="zip" /> | |
| 139 <output name="log"> | 137 <output name="log"> |
| 140 <assert_contents> | 138 <assert_contents> |
| 141 <has_text text="object with 4 samples" /> | 139 <has_text text="object with 4 samples" /> |
| 142 <has_text text="Time range: 2507.7-4481.7 seconds (41.8-74.7 minutes)" /> | 140 <has_text text="Time range: 2507.7-4481.7 seconds (41.8-74.7 minutes)" /> |
| 143 <has_text text="Mass range: 200.1-600 m/z" /> | 141 <has_text text="Mass range: 200.1-600 m/z" /> |
| 155 <param name="methods|missing" value="1"/> | 153 <param name="methods|missing" value="1"/> |
| 156 <param name="methods|options|option" value="show"/> | 154 <param name="methods|options|option" value="show"/> |
| 157 <param name="methods|options|span" value="0.2"/> | 155 <param name="methods|options|span" value="0.2"/> |
| 158 <param name="methods|options|family" value="gaussian"/> | 156 <param name="methods|options|family" value="gaussian"/> |
| 159 <param name="methods|options|plottype" value="deviation"/> | 157 <param name="methods|options|plottype" value="deviation"/> |
| 160 <param name="file_load_conditional|file_load_select" value="yes" /> | 158 <expand macro="test_file_load_single"/> |
| 161 <param name="file_load_conditional|inputs|input" value="single_file" /> | |
| 162 <param name="file_load_conditional|inputs|single_file" value="wt15.CDF,ko16.CDF,ko15.CDF,wt16.CDF" ftype="netcdf" /> | |
| 163 <output name="log"> | 159 <output name="log"> |
| 164 <assert_contents> | 160 <assert_contents> |
| 165 <has_text text="object with 4 samples" /> | 161 <has_text text="object with 4 samples" /> |
| 166 <has_text text="Time range: 2507.7-4481.7 seconds (41.8-74.7 minutes)" /> | 162 <has_text text="Time range: 2507.7-4481.7 seconds (41.8-74.7 minutes)" /> |
| 167 <has_text text="Mass range: 200.1-600 m/z" /> | 163 <has_text text="Mass range: 200.1-600 m/z" /> |