Mercurial > repos > lecorguille > xcms_retcor

comparison abims_xcms_retcor.xml @ 48:366ff564f949 draft

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"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit dcc90f9cf76e6980c0a7d9698c89fab826e7adae"
author workflow4metabolomics
date Wed, 07 Apr 2021 10:31:56 +0000
parents 32c1cbdbdd3b
children 177b5847a211
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47:08b09c2836cd 48:366ff564f949
1 <tool id="abims_xcms_retcor" name="xcms adjustRtime (retcor)" version="@TOOL_VERSION@+galaxy1"> 1 <tool id="abims_xcms_retcor" name="xcms adjustRtime (retcor)" version="@TOOL_VERSION@+galaxy0">
2 2
3 <description>Retention Time Correction</description> 3 <description>Retention Time Correction</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
131 <data name="rawVSadjustedPdf" format="pdf" label="${image.name[:-6]}_rawVSadjusted.adjustRtime.Rplots.pdf" from_work_dir="raw_vs_adjusted_rt.pdf" /> 131 <data name="rawVSadjustedPdf" format="pdf" label="${image.name[:-6]}_rawVSadjusted.adjustRtime.Rplots.pdf" from_work_dir="raw_vs_adjusted_rt.pdf" />
132 </outputs> 132 </outputs>
133 133
134 <tests> 134 <tests>
135 <test> 135 <test>
136 <param name="image" value="faahKO-single-class.xset.group.RData" ftype="rdata"/> 136 <param name="image" value="faahKO-single-class.xset.merged.group.RData" ftype="rdata"/>
137 <conditional name="methods"> 137 <conditional name="methods">
138 <param name="method" value="PeakGroups"/> 138 <param name="method" value="PeakGroups"/>
139 <param name="extraPeaks" value="1"/> 139 <param name="extraPeaks" value="1"/>
140 <param name="minFraction" value="1"/> 140 <param name="minFraction" value="1"/>
141 <conditional name="smooth_cond"> 141 <conditional name="smooth_cond">
307 --------------------------------------------------- 307 ---------------------------------------------------
308 308
309 Changelog/News 309 Changelog/News
310 -------------- 310 --------------
311 311
312 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS 312 @HELP_XCMS_NEWVERSION_31200@
313 313
314 **Version 3.6.1+galaxy1 - 13/02/2020** 314 **Version 3.6.1+galaxy1 - 13/02/2020**
315 315
316 - NEW: if a retention time ajustment have already been applied to your data. The function applyAdjustedRtime will replace raw retention times with adjusted retention times and so alloww to cumulate the ajustments. 316 - NEW: if a retention time ajustment have already been applied to your data. The function applyAdjustedRtime will replace raw retention times with adjusted retention times and so alloww to cumulate the ajustments.
317 317