Mercurial > repos > lecorguille > xcms_retcor

comparison abims_xcms_retcor.xml @ 46:32c1cbdbdd3b draft

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"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 665b0684ed3cd1db5d297e0265c59787f8b66289"
author workflow4metabolomics
date Thu, 13 Feb 2020 11:42:41 +0000
parents 1986c48d86ce
children 366ff564f949
comparison
equal deleted inserted replaced
45:1986c48d86ce 46:32c1cbdbdd3b
1 <tool id="abims_xcms_retcor" name="xcms adjustRtime (retcor)" version="@TOOL_VERSION@+galaxy0"> 1 <tool id="abims_xcms_retcor" name="xcms adjustRtime (retcor)" version="@TOOL_VERSION@+galaxy1">
2 2
3 <description>Retention Time Correction</description> 3 <description>Retention Time Correction</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
288 | See the Obiwarp_manual_ 288 | See the Obiwarp_manual_
289 289
290 .. _PeakGroups_manual: https://rdrr.io/bioc/xcms/man/adjustRtime-peakGroups.html#heading-2 290 .. _PeakGroups_manual: https://rdrr.io/bioc/xcms/man/adjustRtime-peakGroups.html#heading-2
291 .. _Obiwarp_manual: https://rdrr.io/bioc/xcms/man/adjustRtime-obiwarp.html 291 .. _Obiwarp_manual: https://rdrr.io/bioc/xcms/man/adjustRtime-obiwarp.html
292 292
293 WARNING: if a retention time ajustment have already been applied to your data.
294 The function applyAdjustedRtime will replace raw retention times with adjusted retention times and so alloww to cumulate the ajustments.
295
293 @HELP_XCMS_MANUAL@ 296 @HELP_XCMS_MANUAL@
294 297
295 ------------ 298 ------------
296 Output files 299 Output files
297 ------------ 300 ------------
306 Changelog/News 309 Changelog/News
307 -------------- 310 --------------
308 311
309 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS 312 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS
310 313
314 **Version 3.6.1+galaxy1 - 13/02/2020**
315
316 - NEW: if a retention time ajustment have already been applied to your data. The function applyAdjustedRtime will replace raw retention times with adjusted retention times and so alloww to cumulate the ajustments.
317
311 @HELP_XCMS_NEWVERSION_3610@ 318 @HELP_XCMS_NEWVERSION_3610@
312 319
313 **Version 3.4.4.1 - 30/04/2019** 320 **Version 3.4.4.1 - 30/04/2019**
314 321
315 - BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms. 322 - BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms.