Mercurial > repos > lecorguille > xcms_retcor
comparison xcms_retcor.r @ 32:1aa7979204b4 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 11784e03649835a7fadc8ce30314856cf05cde96
| author | lecorguille |
|---|---|
| date | Tue, 06 Mar 2018 04:03:16 -0500 |
| parents | 4d6f4cd7c3ef |
| children | 69b5a006fca1 |
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| 31:281786a7b9a2 | 32:1aa7979204b4 |
|---|---|
| 79 # -- TIC -- | 79 # -- TIC -- |
| 80 cat("\t\tDRAW GRAPHICS\n") | 80 cat("\t\tDRAW GRAPHICS\n") |
| 81 getPlotAdjustedRtime(xdata) | 81 getPlotAdjustedRtime(xdata) |
| 82 | 82 |
| 83 #@TODO: one day, use xdata instead of xset to draw the TICs and BPC or a complete other method | 83 #@TODO: one day, use xdata instead of xset to draw the TICs and BPC or a complete other method |
| 84 getTICs(xcmsSet=xset, rt="raw", pdfname="TICs.pdf") | 84 getTICs(xcmsSet=xset, rt="corrected", pdfname="TICs.pdf") |
| 85 getBPCs(xcmsSet=xset, rt="raw", pdfname="BICs.pdf") | 85 getBPCs(xcmsSet=xset, rt="corrected", pdfname="BICs.pdf") |
| 86 | 86 |
| 87 cat("\n\n") | 87 cat("\n\n") |
| 88 | 88 |
| 89 # ----- EXPORT ----- | 89 # ----- EXPORT ----- |
| 90 | 90 |