Mercurial > repos > lecorguille > xcms_plot_chromatogram

comparison xcms_plot_chromatogram.xml @ 6:e0b5c547925d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 088699d00f7e45bebb7da07bebc005c68df058d8
author lecorguille
date Wed, 05 Sep 2018 05:57:13 -0400
parents e6fdadaf039e
children a4a1143a202a
comparison
equal deleted inserted replaced
5:a5ba342e72e0 6:e0b5c547925d
35 35
36 <tests> 36 <tests>
37 <test> 37 <test>
38 <param name="images" value="faahKO-single.xset.merged.group.retcor.RData" ftype="rdata"/> 38 <param name="images" value="faahKO-single.xset.merged.group.retcor.RData" ftype="rdata"/>
39 <expand macro="test_file_load_single"/> 39 <expand macro="test_file_load_single"/>
40 <param name="sampleMetadata" value="sampleMetadata.tab" ftype="tabular"/>
40 <output name="ticsPdf" value="TICs.pdf" ftype="pdf" compare="sim_size" delta="600" /> 41 <output name="ticsPdf" value="TICs.pdf" ftype="pdf" compare="sim_size" delta="600" />
41 <output name="bpisPdf" value="BPIs.pdf" ftype="pdf" compare="sim_size" delta="600" /> 42 <output name="bpisPdf" value="BPIs.pdf" ftype="pdf" compare="sim_size" delta="600" />
42 </test> 43 </test>
43 <!-- DISABLE FOR TRAVIS 44 <!-- DISABLE FOR TRAVIS
44 <test> 45 <test>
69 Workflow position 70 Workflow position
70 ----------------- 71 -----------------
71 72
72 **Upstream tools** 73 **Upstream tools**
73 74
74 ========================= ================= ============================== ========== 75 =========================== ======================== ==============================
75 Name output file format parameter 76 Name Output file Format
76 ========================= ================= ============================== ========== 77 =========================== ======================== ==============================
77 MSnbase readMSData raw.RData rdata.msnbase.raw RData file 78 MSnbase.readMSData ``*``.raw.RData rdata.msnbase.raw
78 ------------------------- ----------------- ------------------------------ ---------- 79 --------------------------- ------------------------ ------------------------------
79 xcms.xcmsSet xset.RData rdata.xcms.findchrompeaks RData file 80 xcms.findChromPeaks ``*``.raw.xset.RData rdata.xcms.findchrompeaks
80 ------------------------- ----------------- ------------------------------ ---------- 81 --------------------------- ------------------------ ------------------------------
81 xcms.retcor xset.RData rdata.xcms.retcor RData file 82 xcms.findChromPeaks Merger xset.merged.RData rdata.xcms.retcor
82 ========================= ================= ============================== ========== 83 --------------------------- ------------------------ ------------------------------
84 xcms.adjustRtime ``*``.adjustRtime.RData rdata.xcms.retcor
85 =========================== ======================== ==============================
83 86
84 .. image:: xcms_plot_chromatogram_workflow.png 87 .. image:: xcms_plot_chromatogram_workflow.png
85 88
86 --------------------------------------------------- 89 ---------------------------------------------------
87 90