Mercurial > repos > lecorguille > xcms_plot_chromatogram
comparison xcms_plot_chromatogram.r @ 11:5f0327d6f474 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f0d42bca2f34c58c04b55e5990058d479c0ae639
| author | lecorguille |
|---|---|
| date | Fri, 08 Feb 2019 09:57:36 -0500 |
| parents | a4a1143a202a |
| children | 9a5b4a1b9880 |
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| 10:a92c1d4f0173 | 11:5f0327d6f474 |
|---|---|
| 5 cat("\tSESSION INFO\n") | 5 cat("\tSESSION INFO\n") |
| 6 | 6 |
| 7 #Import the different functions | 7 #Import the different functions |
| 8 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) } | 8 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) } |
| 9 source_local("lib.r") | 9 source_local("lib.r") |
| 10 source_local("lib-xcms3.x.x.r") | |
| 11 | 10 |
| 12 pkgs <- c("xcms","batch","RColorBrewer") | 11 pkgs <- c("xcms","batch","RColorBrewer") |
| 13 loadAndDisplayPackages(pkgs) | 12 loadAndDisplayPackages(pkgs) |
| 14 cat("\n\n"); | 13 cat("\n\n"); |
| 15 | 14 |