Mercurial > repos > lecorguille > xcms_merge

comparison xcms_merge.xml @ 16:40791ab6c06b draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit e131bacd37bfaf2c4132fd214c81db9b8a9df513
author lecorguille
date Mon, 17 Sep 2018 08:44:25 -0400
parents 2c7d3db37974
children 068243731881
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15:2c7d3db37974 16:40791ab6c06b
1 <tool id="xcms_merge" name="xcms findChromPeaks Merger" version="@WRAPPER_VERSION@.0"> 1 <tool id="xcms_merge" name="xcms findChromPeaks Merger" version="@WRAPPER_VERSION@.0">
2 <description>Merge xcms findChromPeaks RData in one to be used by group</description> 2 <description>Merge xcms findChromPeaks RData into a unique file to be used by group</description>
3 3
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 <import>macros_xcms.xml</import> 6 <import>macros_xcms.xml</import>
7 </macros> 7 </macros>
88 88
89 ----------- 89 -----------
90 Description 90 Description
91 ----------- 91 -----------
92 92
93 This tool will allow you to run one xcms findChromPeaks process per sample in parallel and then to merge all RData images in one. 93 This tool allows you to run one xcms findChromPeaks process per sample in parallel and then to merge all RData images into one.
94 The result is then suitable for xcms groupChromPeaks. 94 The result is then suitable for xcms groupChromPeaks.
95 95
96 You can provide a sampleMetadata table to attribute phenotypic value to your samples. 96 You can provide a sampleMetadata table to attribute phenotypic values to your samples.
97 97
98 98
99 ----------------- 99 -----------------
100 Workflow position 100 Workflow position
101 ----------------- 101 -----------------
143 Optional : sampleMetadata tsv or csv 143 Optional : sampleMetadata tsv or csv
144 =========================== ================================== 144 =========================== ==================================
145 145
146 Example of a sampleMetadata: 146 Example of a sampleMetadata:
147 147
148 --------------------------- ------------ 148 =========================== ============
149 Samples class
150 =========================== ============
149 HU_neg_028 bio 151 HU_neg_028 bio
150 --------------------------- ------------ 152 --------------------------- ------------
151 HU_neg_034 bio 153 HU_neg_034 bio
152 --------------------------- ------------ 154 --------------------------- ------------
153 Blanc04 blank 155 Blanc04 blank
154 --------------------------- ------------ 156 --------------------------- ------------
155 Blanc06 blank 157 Blanc06 blank
156 --------------------------- ------------ 158 --------------------------- ------------
157 Blanc09 blank 159 Blanc09 blank
158 --------------------------- ------------ 160 =========================== ============
161
159 162
160 ------------ 163 ------------
161 Output files 164 Output files
162 ------------ 165 ------------
163 166