# HG changeset patch
# User lecorguille
# Date 1490213127 14400
# Node ID b41669de74aeb67c9d256d1ab3394f3f8fe27046
# Parent  beda2d981b9dd212bfee58c698d31548bed7e542
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit b1ebca6e0188e0aa0645e67259d6729ce80a6bdf

diff -r beda2d981b9d -r b41669de74ae Makefile
--- a/Makefile	Thu Mar 02 08:21:57 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,23 +0,0 @@
-# USAGE: make [install|clean]
-
-# -------- VARIABLE --------
-
-OBJ=xcms_group.tgz
-DEP=abims_xcms_group.xml tool_dependencies.xml repository_dependencies.xml static test-data
-
-
-# ------------------------
-
-all: $(OBJ)
-
-$(OBJ): $(DEP)
-	tar --exclude=".svn" -zchf $@ $^
-
-# ------------------------
-
-install: $(OBJ)
-	mv *.tgz ~
-
-clean:
-	rm *.tgz
-
diff -r beda2d981b9d -r b41669de74ae README.rst
--- a/README.rst	Thu Mar 02 08:21:57 2017 -0500
+++ b/README.rst	Wed Mar 22 16:05:27 2017 -0400
@@ -8,6 +8,8 @@
 
 - IMPROVEMENT: xcms.group can deal with merged individual data from "xcms.xcmsSet Merger"
 
+- BUGFIX: the default value of "density" -> "Maximum number of groups to identify in a single m/z slice" which was of 5 have been changed to fix with the XMCS default values to 50
+
 **Version 2.0.6 - 06/07/2016**
 
 - UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0
diff -r beda2d981b9d -r b41669de74ae abims_xcms_group.xml
--- a/abims_xcms_group.xml	Thu Mar 02 08:21:57 2017 -0500
+++ b/abims_xcms_group.xml	Wed Mar 22 16:05:27 2017 -0400
@@ -64,7 +64,7 @@
                 <option value="hide" selected="true">hide</option>
             </param>
             <when value="show">
-                <param name="max" type="integer" value="5" label="Maximum number of groups to identify in a single m/z slice" help="[max]" />
+                <param name="max" type="integer" value="50" label="Maximum number of groups to identify in a single m/z slice" help="[max]" />
             </when>
             <when value="hide">
             </when>
@@ -419,6 +419,8 @@
 
 - IMPROVEMENT: xcms.group can deal with merged individual data from "xcms.xcmsSet Merger"
 
+- BUGFIX: the default value of "density" -> "Maximum number of groups to identify in a single m/z slice" which was of 5 have been changed to fix with the XMCS default values to 50
+
 **Version 2.0.6 - 06/07/2016**
 
 - UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0