Mercurial > repos > lecorguille > xcms_group

diff xcms.r @ 15:fa9fe7d46ec3 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit b3ba169290fd2e40dafe167f345106c1c3da3ebe
author: lecorguille
date: Wed, 08 Feb 2017 04:35:35 -0500
parents: f4dc089f9d19
children: 1a0b21cb7f14
--- a/xcms.r	Sun Feb 05 08:56:10 2017 -0500
+++ b/xcms.r	Wed Feb 08 04:35:35 2017 -0500
@@ -252,8 +252,7 @@
     getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf)
 }
 
-if (thefunction == "fillPeaks") {
-    cat("\t\tGET THE PEAK LIST\n")
+if ((thefunction == "group" || thefunction == "fillPeaks") && exists("intval")) {
     getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput)
 }