Mercurial > repos > lecorguille > xcms_group

diff xcms.r @ 23:dcff3c4a8c80 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 5583baab62c0f17cabbfe93ba4f2522e8df9b36b
author lecorguille
date Thu, 30 Mar 2017 08:34:09 -0400
parents beda2d981b9d
children 36b470f3ebcf
line wrap: on
line diff
--- a/xcms.r	Wed Mar 22 16:05:27 2017 -0400
+++ b/xcms.r	Thu Mar 30 08:34:09 2017 -0400
@@ -101,7 +101,9 @@
 
 
 if (thefunction %in% c("xcmsSet","retcor","fillPeaks"))  {
-    rawFilePath = getRawfilePathFromArguments(listArguments)
+    if (!exists("singlefile")) singlefile=NULL
+    if (!exists("zipfile")) zipfile=NULL
+    rawFilePath = getRawfilePathFromArguments(singlefile, zipfile, listArguments)
     zipfile = rawFilePath$zipfile
     singlefile = rawFilePath$singlefile
     listArguments = rawFilePath$listArguments