Mercurial > repos > lecorguille > xcms_group
comparison xcms.r @ 17:a28473761624 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 481448087f0e09c131b24f7d552db69f3552d371-dirty
| author | lecorguille |
|---|---|
| date | Wed, 08 Feb 2017 06:24:44 -0500 |
| parents | 1a0b21cb7f14 |
| children | a79d839d625f |
comparison
equal
deleted
inserted
replaced
| 16:1a0b21cb7f14 | 17:a28473761624 |
|---|---|
| 250 cat("\t\tGET TIC GRAPH\n") | 250 cat("\t\tGET TIC GRAPH\n") |
| 251 getTICs(xcmsSet=xset, pdfname=ticspdf,rt="corrected") | 251 getTICs(xcmsSet=xset, pdfname=ticspdf,rt="corrected") |
| 252 getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf) | 252 getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf) |
| 253 } | 253 } |
| 254 | 254 |
| 255 if (thefunction == "fillPeaks" && exists("intval")) { | 255 if ((thefunction == "group" || thefunction == "fillPeaks") && exists("intval")) { |
| 256 getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput) | 256 getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput) |
| 257 } | 257 } |
| 258 | 258 |
| 259 | 259 |
| 260 cat("\n\n") | 260 cat("\n\n") |