# HG changeset patch
# User lecorguille
# Date 1486463273 18000
# Node ID 98d0d4b625034df80ddd5e1b84b29a3e5cd188b8
# Parent  5f61570177e271e2511ab22623da65a893f83d44
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 717c02f887ce343ca55f862c8020aaf49f5581d8

diff -r 5f61570177e2 -r 98d0d4b62503 xcms.r
--- a/xcms.r	Sun Feb 05 08:57:59 2017 -0500
+++ b/xcms.r	Tue Feb 07 05:27:53 2017 -0500
@@ -252,8 +252,7 @@
     getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf)
 }
 
-if (thefunction == "fillPeaks") {
-    cat("\t\tGET THE PEAK LIST\n")
+if (thefunction == "fillPeaks" && exists("intval")) {
     getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput)
 }