Mercurial > repos > lecorguille > xcms_fillpeaks

diff xcms.r @ 17:98d0d4b62503 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 717c02f887ce343ca55f862c8020aaf49f5581d8
author lecorguille
date Tue, 07 Feb 2017 05:27:53 -0500
parents 5f61570177e2
children 65dc5e8b53f7
line wrap: on
line diff
--- a/xcms.r	Sun Feb 05 08:57:59 2017 -0500
+++ b/xcms.r	Tue Feb 07 05:27:53 2017 -0500
@@ -252,8 +252,7 @@
     getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf)
 }
 
-if (thefunction == "fillPeaks") {
-    cat("\t\tGET THE PEAK LIST\n")
+if (thefunction == "fillPeaks" && exists("intval")) {
     getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput)
 }