Mercurial > repos > lecorguille > xcms_fillpeaks

diff xcms.r @ 26:4db7afa8284d draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 5583baab62c0f17cabbfe93ba4f2522e8df9b36b
author lecorguille
date Thu, 30 Mar 2017 08:35:34 -0400
parents 7a01dfc8be41
children f6d3e6be4ea3
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line diff
--- a/xcms.r	Wed Mar 22 16:07:01 2017 -0400
+++ b/xcms.r	Thu Mar 30 08:35:34 2017 -0400
@@ -101,7 +101,9 @@
 
 
 if (thefunction %in% c("xcmsSet","retcor","fillPeaks"))  {
-    rawFilePath = getRawfilePathFromArguments(listArguments)
+    if (!exists("singlefile")) singlefile=NULL
+    if (!exists("zipfile")) zipfile=NULL
+    rawFilePath = getRawfilePathFromArguments(singlefile, zipfile, listArguments)
     zipfile = rawFilePath$zipfile
     singlefile = rawFilePath$singlefile
     listArguments = rawFilePath$listArguments