Mercurial > repos > lecorguille > xcms_fillpeaks

comparison test-data/log.txt @ 6:f00e39a4b0fb draft

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planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e
author lecorguille
date Thu, 07 Apr 2016 16:13:02 -0400
parents 107a3de94c05
children
comparison
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5:061958ded240 6:f00e39a4b0fb
1 PACKAGE INFO 1 PACKAGE INFO
2 parallel 3.1.2 2 parallel 3.2.2
3 BiocGenerics 0.14.0 3 BiocGenerics 0.16.1
4 Biobase 2.28.0 4 Biobase 2.30.0
5 Rcpp 0.12.0 5 Rcpp 0.12.2
6 mzR 2.2.2 6 mzR 2.4.1
7 xcms 1.44.0 7 xcms 1.44.0
8 snow 0.3.13 8 snow 0.4.1
9 batch 1.1.4 9 batch 1.1.4
10 10
11 11
12 ARGUMENTS INFO 12 ARGUMENTS INFO
13 xfunction fillPeaks 13 xfunction fillPeaks
14 image test-data/xset.group.retcor.group.RData 14 image /tmp/tmpk97EMC/files/000/dataset_1.dat
15 xsetRdataOutput test-data/xset.group.retcor.group.fillPeaks.RData 15 xsetRdataOutput /tmp/tmpk97EMC/files/000/dataset_3.dat
16 method chrom 16 method chrom
17 zipfile test-data/sacuri.zip 17 zipfile /tmp/tmpk97EMC/files/000/dataset_2.dat
18 18
19 19
20 INFILE PROCESSING INFO 20 INFILE PROCESSING INFO
21 21
22 22
23 ARGUMENTS PROCESSING INFO 23 ARGUMENTS PROCESSING INFO
24 files_root_directory sacuri
25 Compute md5 checksum...
24 26
25 27
26 MAIN PROCESSING INFO 28 MAIN PROCESSING INFO
27 ./sacuri/bio/HU_neg_028.mzXML 29 sacuri/bio/HU_neg_017.mzXML
28 ./sacuri/bio/HU_neg_060.mzXML 30 sacuri/bio/HU_neg_028.mzXML
29 ./sacuri/bio/HU_neg_051.mzXML 31 sacuri/blank/Blanc04.mzXML
30 ./sacuri/bio/HU_neg_017.mzXML 32 sacuri/blank/Blanc06.mzXML
31 ./sacuri/bio/HU_neg_034.mzXML 33
32 ./sacuri/blank/Blanc09.mzXML 34
33 ./sacuri/blank/Blanc06.mzXML
34 ./sacuri/blank/Blanc12.mzXML
35 ./sacuri/blank/Blanc04.mzXML
36 null device 35 null device
37 1 36 1
38 37
39 38
40 XSET OBJECT INFO 39 XSET OBJECT INFO
41 An "xcmsSet" object with 9 samples 40 An "xcmsSet" object with 4 samples
42 41
43 Time range: 0.7-1139.9 seconds (0-19 minutes) 42 Time range: 0.2-1140.1 seconds (0-19 minutes)
44 Mass range: 50.0019-999.9863 m/z 43 Mass range: 50.0021-999.9863 m/z
45 Peaks: 157780 (about 17531 per sample) 44 Peaks: 199718 (about 49930 per sample)
46 Peak Groups: 6761 45 Peak Groups: 48958
47 Sample classes: bio, blank 46 Sample classes: bio, blank
48 47
49 Profile settings: method = bin 48 Profile settings: method = bin
50 step = 0.01 49 step = 0.01
51 50
52 Memory usage: 17.4 MB 51 Memory usage: 27.3 MB
53 52
54 53
55 DONE 54 DONE