Mercurial > repos > lecorguille > xcms_fillpeaks
comparison xcms_fillpeaks.r @ 43:eeade1310758 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a5136bfc124956893f4f0c91808d1c0d78c4ea01
| author | lecorguille |
|---|---|
| date | Mon, 29 Apr 2019 06:14:27 -0400 |
| parents | a98dbb09fed1 |
| children | 1b5fb5a27f5e |
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| 42:a98dbb09fed1 | 43:eeade1310758 |
|---|---|
| 101 xset <- getxcmsSetObject(xdata) | 101 xset <- getxcmsSetObject(xdata) |
| 102 print(xset) | 102 print(xset) |
| 103 cat("\n\n") | 103 cat("\n\n") |
| 104 | 104 |
| 105 #saving R data in .Rdata file to save the variables used in the present tool | 105 #saving R data in .Rdata file to save the variables used in the present tool |
| 106 objects2save = c("xdata","zipfile","singlefile","md5sumList","sampleNamesList", "chromTIC", "chromBPI", "chromTIC_adjusted", "chromBPI_adjusted") | 106 objects2save = c("xdata","zipfile","singlefile","md5sumList","sampleNamesList") #, "chromTIC", "chromBPI", "chromTIC_adjusted", "chromBPI_adjusted") |
| 107 save(list=objects2save[objects2save %in% ls()], file="fillpeaks.RData") | 107 save(list=objects2save[objects2save %in% ls()], file="fillpeaks.RData") |
| 108 | 108 |
| 109 cat("\n\n") | 109 cat("\n\n") |
| 110 | 110 |
| 111 | 111 |