Mercurial > repos > lecorguille > xcms_fillpeaks

comparison abims_xcms_fillPeaks.xml @ 22:a6938c381d4e draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit b274c5c21db1a6ad63c28d425a7a6bce483a4af4
author lecorguille
date Fri, 10 Feb 2017 11:03:13 -0500
parents 02bb34af0921
children 7e289788d37d
comparison
equal deleted inserted replaced
21:99094333f540 22:a6938c381d4e
1 <tool id="abims_xcms_fillPeaks" name="xcms.fillPeaks" version="2.1.1"> 1 <tool id="abims_xcms_fillPeaks" name="xcms.fillPeaks" version="2.1.0">
2 2
3 <description>Integrate a sample's signal in regions where peak groups are not represented to create new peaks in missing areas</description> 3 <description>Integrate a sample's signal in regions where peak groups are not represented to create new peaks in missing areas</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
10 <expand macro="stdio"/> 10 <expand macro="stdio"/>
11 11
12 <command><![CDATA[ 12 <command><![CDATA[
13 @COMMAND_XCMS_SCRIPT@ 13 @COMMAND_XCMS_SCRIPT@
14 xfunction fillPeaks 14 xfunction fillPeaks
15 image $image 15 image '$image'
16 16
17 xsetRdataOutput $xsetRData 17 xsetRdataOutput '$xsetRData'
18 18
19 method $method 19 method $method
20 20
21 @COMMAND_PEAKLIST@ 21 @COMMAND_PEAKLIST@
22 22
270 --------------------------------------------------- 270 ---------------------------------------------------
271 271
272 Changelog/News 272 Changelog/News
273 -------------- 273 --------------
274 274
275 **Version 2.1.1 - 07/02/2017** 275 **Version 2.1.0 - 07/02/2017**
276 276
277 - IMPROVEMENT: change the management of the peaklist ids. The main ids remain the same as xcms generated. The export setiings now only add custom names in the variableMetadata tab (namecustom) 277 - IMPROVEMENT: change the management of the peaklist ids. The main ids remain the same as xcms generated. The export setiings now only add custom names in the variableMetadata tab (namecustom)
278 278
279 **Version 2.1.0 - 03/02/2017**
280
281 - IMPROVEMENT: xcms.fillpeaks can deal with merged individual data 279 - IMPROVEMENT: xcms.fillpeaks can deal with merged individual data
282 280
283 **Version 2.0.8 - 22/12/2016** 281 **Version 2.0.8 - 22/12/2016**
284 282
285 - IMPROVEMENT: Add an option to export the peak list at this step without having to wait for CAMERA.annotate 283 - IMPROVEMENT: Add an option to export the peak list at this step without having to wait for CAMERA.annotate