comparison abims_xcms_fillPeaks.xml @ 38:a3e80894efd3 draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit e131bacd37bfaf2c4132fd214c81db9b8a9df513

37:9eefb022a189

                <has_text text="Sample classes: KO, WT" />
            </assert_stdout>
            <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.variableMetadata.tsv" />
            <output name="dataMatrix" file="faahKO.xset.group.retcor.group.fillPeaks.dataMatrix.tsv" />
        </test>-->
        <test>
            <param name="image" value="faahKO-single.xset.merged.group2.retcor2.group2.RData" ftype="rdata"/>
            <conditional name="peaklist">
                <param name="peaklistBool" value="true" />
                <param name="convertRTMinute" value="false" />

                <has_text text="Peaks: 15230 (about 3808 per sample)" />
                <has_text text="Peak Groups: 6332" />
                <has_text text="Sample classes: KO, WT" />
            </assert_stdout>
            <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" />
            <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.tsv" />
        </test>
    </tests>

    <help><![CDATA[

38:a3e80894efd3

                <has_text text="Sample classes: KO, WT" />
            </assert_stdout>
            <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.variableMetadata.tsv" />
            <output name="dataMatrix" file="faahKO.xset.group.retcor.group.fillPeaks.dataMatrix.tsv" />
        </test>-->
        <!--<test>
            <param name="image" value="faahKO-single.xset.merged.group2.retcor2.group2.RData" ftype="rdata"/>
            <conditional name="peaklist">
                <param name="peaklistBool" value="true" />
                <param name="convertRTMinute" value="false" />
                <param name="numDigitsMZ" value="4" />
                <param name="numDigitsRT" value="1" />
                <param name="naTOzero" value="false" />
            </conditional>
            <expand macro="test_file_load_single"/>
            <assert_stdout>
                <has_text text="expandMz: 0" />
                <has_text text="expandRt: 0" />
                <has_text text="object with 4 samples" />
                <has_text text="Time range: 2499.4-4473.6 seconds (41.7-74.6 minutes)" />
                <has_text text="Mass range: 200.1-600 m/z" />
                <has_text text="Peaks: 15230 (about 3808 per sample)" />
                <has_text text="Peak Groups: 6332" />
                <has_text text="Sample classes: KO, WT" />
            </assert_stdout>
            <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" />
            <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.tsv" />
        </test>-->
        <test>
            <param name="image" value="faahKO-single.xset.merged.group2.retcor2.group2.RData" ftype="rdata"/>
            <conditional name="peaklist">
                <param name="peaklistBool" value="true" />
                <param name="convertRTMinute" value="false" />

                <has_text text="Peaks: 15230 (about 3808 per sample)" />
                <has_text text="Peak Groups: 6332" />
                <has_text text="Sample classes: KO, WT" />
            </assert_stdout>
            <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" />
            <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.NAless.tsv" />
        </test>
    </tests>

    <help><![CDATA[