Mercurial > repos > lecorguille > xcms_fillpeaks
comparison test-data/xcms_plot_raw_testdata.mzML @ 46:871ffc15a6da draft
planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit eca29d4347fe2f4802091c4a06715232a6fd9253
| author | workflow4metabolomics |
|---|---|
| date | Mon, 15 Jul 2024 15:52:02 +0000 |
| parents | |
| children |
comparison
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| 45:1a711c1b8b1f | 46:871ffc15a6da |
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