Mercurial > repos > lecorguille > xcms_fillpeaks

comparison xcms.r @ 18:65dc5e8b53f7 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit b3ba169290fd2e40dafe167f345106c1c3da3ebe
author lecorguille
date Wed, 08 Feb 2017 04:36:59 -0500
parents 98d0d4b62503
children 7b74ec867ad2
comparison
equal deleted inserted replaced
17:98d0d4b62503 18:65dc5e8b53f7
250 cat("\t\tGET TIC GRAPH\n") 250 cat("\t\tGET TIC GRAPH\n")
251 getTICs(xcmsSet=xset, pdfname=ticspdf,rt="corrected") 251 getTICs(xcmsSet=xset, pdfname=ticspdf,rt="corrected")
252 getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf) 252 getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf)
253 } 253 }
254 254
255 if (thefunction == "fillPeaks" && exists("intval")) { 255 if ((thefunction == "group" || thefunction == "fillPeaks") && exists("intval")) {
256 getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput) 256 getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput)
257 } 257 }
258 258
259 259
260 cat("\n\n") 260 cat("\n\n")