Mercurial > repos > lecorguille > xcms_fillpeaks
comparison abims_xcms_fillPeaks.xml @ 9:46f62282c8d8 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
| author | lecorguille |
|---|---|
| date | Mon, 25 Apr 2016 11:09:51 -0400 |
| parents | f00e39a4b0fb |
| children | 35269602a971 |
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| 8:137a69f4bcf1 | 9:46f62282c8d8 |
|---|---|
| 39 <data name="xsetRData" format="rdata.xcms.fillpeaks" label="${image.name[:-6]}.fillPeaks.RData" /> | 39 <data name="xsetRData" format="rdata.xcms.fillpeaks" label="${image.name[:-6]}.fillPeaks.RData" /> |
| 40 <data name="log" format="txt" label="xset.log.txt" hidden="true" /> | 40 <data name="log" format="txt" label="xset.log.txt" hidden="true" /> |
| 41 </outputs> | 41 </outputs> |
| 42 | 42 |
| 43 <tests> | 43 <tests> |
| 44 <test> | 44 <!--<test> |
| 45 <param name="image" value="xset.group.retcor.group.RData"/> | 45 <param name="image" value="xset.group.retcor.group.RData"/> |
| 46 <param name="method" value="chrom"/> | 46 <param name="method" value="chrom"/> |
| 47 <param name="zip_file" value="sacuri_dir_root.zip" ftype="zip" /> | 47 <param name="zip_file" value="sacuri_dir_root.zip" ftype="zip" /> |
| 48 <output name="log"> | 48 <output name="log"> |
| 49 <assert_contents> | 49 <assert_contents> |
| 53 <has_text text="Peaks: 199718 (about 49930 per sample)" /> | 53 <has_text text="Peaks: 199718 (about 49930 per sample)" /> |
| 54 <has_text text="Peak Groups: 48958" /> | 54 <has_text text="Peak Groups: 48958" /> |
| 55 <has_text text="Sample classes: bio, blank" /> | 55 <has_text text="Sample classes: bio, blank" /> |
| 56 </assert_contents> | 56 </assert_contents> |
| 57 </output> | 57 </output> |
| 58 </test>--> | |
| 59 <test> | |
| 60 <param name="image" value="faahKO.xset.group.retcor.group.RData"/> | |
| 61 <param name="method" value="chrom"/> | |
| 62 <param name="zip_file" value="faahKO_reduce.zip" ftype="zip" /> | |
| 63 <output name="log"> | |
| 64 <assert_contents> | |
| 65 <has_text text="object with 4 samples" /> | |
| 66 <has_text text="Time range: 2506-4484 seconds (41.8-74.7 minutes)" /> | |
| 67 <has_text text="Mass range: 200.1-600 m/z" /> | |
| 68 <has_text text="Peaks: 32720 (about 8180 per sample)" /> | |
| 69 <has_text text="Peak Groups: 8157" /> | |
| 70 <has_text text="Sample classes: KO, WT" /> | |
| 71 </assert_contents> | |
| 72 </output> | |
| 58 </test> | 73 </test> |
| 59 </tests> | 74 </tests> |
| 60 | 75 |
| 61 <help><![CDATA[ | 76 <help><![CDATA[ |
| 62 | 77 |