Mercurial > repos > lecorguille > xcms_fillpeaks

comparison planemo_test.sh @ 10:35269602a971 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 960f403303e1691bdd6137c46895feb333b36a82
author lecorguille
date Mon, 04 Jul 2016 08:44:30 -0400
parents 46f62282c8d8
children
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9:46f62282c8d8 10:35269602a971
1 # Example of planemo command to launch test 1 # Example of planemo command to launch test
2
3 # Note: --galaxy_branch "dev" is set to deal with zip file
4 2
5 3
6 # -- Use of installed package environments 4 # -- Use of installed package environments
7 # after having installing package on a local galaxy instance 5 # after having installing package on a local galaxy instance
8 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh 6 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh 7 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh
10 planemo test --install_galaxy --galaxy_branch "dev" 8 planemo test --install_galaxy
11 9
12 #All 1 test(s) executed passed. 10 #All 1 test(s) executed passed.
13 #abims_xcms_fillPeaks[0]: passed 11 #abims_xcms_fillPeaks[0]: passed
14 12
15 13
16 # -- Use of conda dependencies 14 # -- Use of conda dependencies
17 planemo conda_init --conda_prefix /tmp/mc 15 planemo conda_init --conda_prefix /tmp/mc
18 planemo conda_install --conda_prefix /tmp/mc . 16 planemo conda_install --conda_prefix /tmp/mc .
19 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev" 17 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution
20 18
21 #All 1 test(s) executed passed. 19 #All 1 test(s) executed passed.
22 #abims_xcms_fillPeaks[0]: passed 20 #abims_xcms_fillPeaks[0]: passed
23 21
24 22