Mercurial > repos > lecorguille > xcms_fillpeaks

comparison abims_xcms_fillPeaks.xml @ 45:1a711c1b8b1f draft

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"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit dcc90f9cf76e6980c0a7d9698c89fab826e7adae"
author workflow4metabolomics
date Wed, 07 Apr 2021 10:28:50 +0000
parents 1b5fb5a27f5e
children 871ffc15a6da
comparison
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44:1b5fb5a27f5e 45:1a711c1b8b1f
127 </assert_stdout> 127 </assert_stdout>
128 <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" /> 128 <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" />
129 <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.tsv" /> 129 <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.tsv" />
130 </test>--> 130 </test>-->
131 <test> 131 <test>
132 <param name="image" value="faahKO-single.xset.merged.group2.retcor2.group2.RData" ftype="rdata"/> 132 <param name="image" value="faahKO-single-class.xset.merged.group.retcor.group.RData" ftype="rdata"/>
133 <section name="peaklist"> 133 <section name="peaklist">
134 <param name="peaklistBool" value="true" /> 134 <param name="peaklistBool" value="true" />
135 <param name="convertRTMinute" value="false" /> 135 <param name="convertRTMinute" value="false" />
136 <param name="numDigitsMZ" value="4" /> 136 <param name="numDigitsMZ" value="4" />
137 <param name="numDigitsRT" value="1" /> 137 <param name="numDigitsRT" value="1" />
139 <expand macro="test_file_load_single"/> 139 <expand macro="test_file_load_single"/>
140 <assert_stdout> 140 <assert_stdout>
141 <has_text text="expandMz: 0" /> 141 <has_text text="expandMz: 0" />
142 <has_text text="expandRt: 0" /> 142 <has_text text="expandRt: 0" />
143 <has_text text="object with 4 samples" /> 143 <has_text text="object with 4 samples" />
144 <has_text text="Time range: 2499.4-4473.6 seconds (41.7-74.6 minutes)" /> 144 <has_text text="Time range: 2507.6-4481.8 seconds (41.8-74.7 minutes)" />
145 <has_text text="Mass range: 200.1-600 m/z" /> 145 <has_text text="Mass range: 200.1-600 m/z" />
146 <has_text text="Peaks: 15218 (about 3804 per sample)" /> 146 <has_text text="Peaks: 18995 (about 4749 per sample)" />
147 <has_text text="Peak Groups: 6332" /> 147 <has_text text="Peak Groups: 8209" />
148 <has_text text="Sample classes: KO, WT" /> 148 <has_text text="Sample classes: KO, WT" />
149 </assert_stdout> 149 </assert_stdout>
150 <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" /> 150 <output name="variableMetadata" file="faahKO-single-class.xset.group.retcor.group.fillPeaks.variableMetadata.tsv" />
151 <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.NAless.tsv" /> 151 <output name="dataMatrix" file="faahKO-single-class.xset.group.retcor.group.fillPeaks.dataMatrix.NAless.tsv" />
152 </test> 152 </test>
153 </tests> 153 </tests>
154 154
155 <help><![CDATA[ 155 <help><![CDATA[
156 156
228 --------------------------------------------------- 228 ---------------------------------------------------
229 229
230 Changelog/News 230 Changelog/News
231 -------------- 231 --------------
232 232
233 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS 233 @HELP_XCMS_NEWVERSION_31200@
234 234
235 @HELP_XCMS_NEWVERSION_3610@ 235 @HELP_XCMS_NEWVERSION_3610@
236 236
237 @HELP_XCMS_NEWVERSION_3440@ 237 @HELP_XCMS_NEWVERSION_3440@
238 238