comparison xcms.r @ 20:02bb34af0921 draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 481448087f0e09c131b24f7d552db69f3552d371-dirty

19:7b74ec867ad2

    cat("\t\tGET TIC GRAPH\n")
    getTICs(xcmsSet=xset, pdfname=ticspdf,rt="corrected")
    getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf)
}

if (thefunction == "fillPeaks" && exists("intval")) {
    getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput)
}


cat("\n\n")

20:02bb34af0921

    cat("\t\tGET TIC GRAPH\n")
    getTICs(xcmsSet=xset, pdfname=ticspdf,rt="corrected")
    getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf)
}

if ((thefunction == "group" || thefunction == "fillPeaks") && exists("intval")) {
    getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput)
}


cat("\n\n")