Mercurial > repos > lecorguille > xcms_fillpeaks

annotate README.rst @ 31:8fd5b5afa24d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit e384d6dd5f410799ec211f73bca0b5d5d7bc651e
author lecorguille
date Thu, 01 Mar 2018 04:17:29 -0500
parents 6b5ed508f81f
children ea611367e1da
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
061958ded240 planemo upload
lecorguille
parents:
diff changeset
1
061958ded240 planemo upload
lecorguille
parents:
diff changeset
2 Changelog/News
061958ded240 planemo upload
lecorguille
parents:
diff changeset
3 --------------
061958ded240 planemo upload
lecorguille
parents:
diff changeset
4
30
6b5ed508f81f planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 73791d74546087b2a872d9279df960f5bc207298
lecorguille
parents: 22
diff changeset
5 **Version 2.1.1 - 29/11/2017**
6b5ed508f81f planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 73791d74546087b2a872d9279df960f5bc207298
lecorguille
parents: 22
diff changeset
6
6b5ed508f81f planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 73791d74546087b2a872d9279df960f5bc207298
lecorguille
parents: 22
diff changeset
7 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
6b5ed508f81f planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 73791d74546087b2a872d9279df960f5bc207298
lecorguille
parents: 22
diff changeset
8
22
a6938c381d4e planemo upload for repository https://github.com/workflow4metabolomics/xcms commit b274c5c21db1a6ad63c28d425a7a6bce483a4af4
lecorguille
parents: 20
diff changeset
9 **Version 2.1.0 - 07/02/2017**
20
02bb34af0921 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 481448087f0e09c131b24f7d552db69f3552d371-dirty
lecorguille
parents: 19
diff changeset
10
02bb34af0921 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 481448087f0e09c131b24f7d552db69f3552d371-dirty
lecorguille
parents: 19
diff changeset
11 - IMPROVEMENT: change the management of the peaklist ids. The main ids remain the same as xcms generated. The export setiings now only add custom names in the variableMetadata tab (namecustom)
02bb34af0921 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 481448087f0e09c131b24f7d552db69f3552d371-dirty
lecorguille
parents: 19
diff changeset
12
16
5f61570177e2 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 22c4e92909198328fc7439ff47e4546a273eb907
lecorguille
parents: 15
diff changeset
13 - IMPROVEMENT: xcms.fillpeaks can deal with merged individual data
5f61570177e2 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 22c4e92909198328fc7439ff47e4546a273eb907
lecorguille
parents: 15
diff changeset
14
15
1c78d61fd646 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 08e7f269a5c59687a7768be8db5fcb4e4d736093
lecorguille
parents: 12
diff changeset
15 **Version 2.0.8 - 22/12/2016**
1c78d61fd646 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 08e7f269a5c59687a7768be8db5fcb4e4d736093
lecorguille
parents: 12
diff changeset
16
1c78d61fd646 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 08e7f269a5c59687a7768be8db5fcb4e4d736093
lecorguille
parents: 12
diff changeset
17 - IMPROVEMENT: Add an option to export the peak list at this step without have to wait camara.annotate
1c78d61fd646 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 08e7f269a5c59687a7768be8db5fcb4e4d736093
lecorguille
parents: 12
diff changeset
18
12
1009f0279137 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4
lecorguille
parents: 8
diff changeset
19 **Version 2.0.7 - 06/07/2016**
1009f0279137 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4
lecorguille
parents: 8
diff changeset
20
1009f0279137 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4
lecorguille
parents: 8
diff changeset
21 - UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0
1009f0279137 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4
lecorguille
parents: 8
diff changeset
22
6
f00e39a4b0fb planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e
lecorguille
parents: 5
diff changeset
23 **Version 2.0.6 - 04/04/2016**
f00e39a4b0fb planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e
lecorguille
parents: 5
diff changeset
24
f00e39a4b0fb planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e
lecorguille
parents: 5
diff changeset
25 - TEST: refactoring to pass planemo test using conda dependencies
f00e39a4b0fb planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e
lecorguille
parents: 5
diff changeset
26
f00e39a4b0fb planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e
lecorguille
parents: 5
diff changeset
27
5
061958ded240 planemo upload
lecorguille
parents:
diff changeset
28 **Version 2.0.5 - 10/02/2016**
061958ded240 planemo upload
lecorguille
parents:
diff changeset
29
061958ded240 planemo upload
lecorguille
parents:
diff changeset
30 - BUGFIX: better management of errors. Datasets remained green although the process failed
061958ded240 planemo upload
lecorguille
parents:
diff changeset
31
061958ded240 planemo upload
lecorguille
parents:
diff changeset
32 - UPDATE: refactoring of internal management of inputs/outputs
061958ded240 planemo upload
lecorguille
parents:
diff changeset
33
061958ded240 planemo upload
lecorguille
parents:
diff changeset
34 - UPDATE: refactoring to feed the new report tool
061958ded240 planemo upload
lecorguille
parents:
diff changeset
35
061958ded240 planemo upload
lecorguille
parents:
diff changeset
36
061958ded240 planemo upload
lecorguille
parents:
diff changeset
37 **Version 2.0.2 - 02/06/2015**
061958ded240 planemo upload
lecorguille
parents:
diff changeset
38
061958ded240 planemo upload
lecorguille
parents:
diff changeset
39 - IMPROVEMENT: new datatype/dataset formats (rdata.xcms.raw, rdata.xcms.group, rdata.xcms.retcor ...) will facilitate the sequence of tools and so avoid incompatibility errors.
061958ded240 planemo upload
lecorguille
parents:
diff changeset
40
061958ded240 planemo upload
lecorguille
parents:
diff changeset
41 - IMPROVEMENT: parameter labels have changed to facilitate their reading.