Mercurial > repos > lecorguille > msnbase_readmsdata

diff msnbase_readmsdata.xml @ 16:733d32b30aff draft default tip

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planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit 95721ced8347c09e79340e6d67ecb41c5cc64163
author workflow4metabolomics
date Mon, 03 Feb 2025 14:43:08 +0000
parents b25a582ab6c1
children
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--- a/msnbase_readmsdata.xml	Mon Jul 15 15:56:53 2024 +0000
+++ b/msnbase_readmsdata.xml	Mon Feb 03 14:43:08 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="msnbase_readmsdata" name="MSnbase readMSData" version="@WRAPPER_VERSION@+galaxy2">
+<tool id="msnbase_readmsdata" name="MSnbase readMSData" version="@WRAPPER_VERSION@+galaxy3">
     <description>Imports mass-spectrometry data files</description>
 
     <macros>
@@ -7,10 +7,14 @@
     </macros>
 
     <expand macro="requirements"/>
+    <required_files>
+        <include path="msnbase_readmsdata.r" />
+        <include path="lib.r" />
+    </required_files>
     <expand macro="stdio"/>
 
     <command><![CDATA[
-        @COMMAND_RSCRIPT@/msnbase_readmsdata.r
+        @COMMAND_RSCRIPT@msnbase_readmsdata.r
 
         #if $input.is_of_type("mzxml") or $input.is_of_type("mzml") or $input.is_of_type("mzdata") or $input.is_of_type("netcdf"):
             #if $os.path.islink(str($input))