# HG changeset patch
# User lecorguille
# Date 1475182516 14400
# Node ID d63c80d54b24901e1f695da67b52c5379230570d
# Parent  9fa5856f61845341393c4bff416d2cdb026370e2
planemo upload commit ed7e37099389cdc575d4163ed277b882a0043e5a-dirty

diff -r 9fa5856f6184 -r d63c80d54b24 ipo4xcmsSet.xml
--- a/ipo4xcmsSet.xml	Thu Jul 28 11:11:38 2016 -0400
+++ b/ipo4xcmsSet.xml	Thu Sep 29 16:55:16 2016 -0400
@@ -1,6 +1,6 @@
 <tool id="ipo4xcmsSet" name="IPO for xcmsSet" version="0.0.3">
     
-    <description>Filtration and Peak Identification using xcmsSet function from xcms R package to preprocess LC/MS data for relative quantification and statistical analysis </description>
+    <description>IPO optimization process for xcms.xcmsSet</description>
     
     <macros>
         <import>macros.xml</import>
@@ -87,7 +87,7 @@
                     <when value="show">
                         <param name="snthresh" type="text" value="10" label="Range for Signal/Noise threshold" help="[snthresh] Signal to noise ratio cutoff (ex: 10 or 5,15)" />
                         <param name="mzdiff" type="text" value="-0.001" label="Range for Min m/z difference" help="[mzdiff] Min m/z difference for peaks with overlapping RT (ex: -0.001 or -0.001,0.010)" />
-                        <param name="integrate" type="select" label="Peak limits method" help="[integrate]" multiple="true" >
+                        <param name="integrate" type="select" label="Peak limits method" help="[integrate]" >
                             <option value="1">1 - peak limits based on smoothed 2nd derivative (less precise)</option>
                             <option value="2">2 - peak limits based on real data (more sensitive to noise)</option>
                         </param>