Mercurial > repos > lecorguille > ipo

diff lib.r @ 1:508ab373b524 draft

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planemo upload commit 2c68962f28b58980db71ac15b6a3e75bbcf7885b-dirty
author lecorguille
date Mon, 25 Jul 2016 09:49:16 -0400
parents b2032600d98f
children
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--- a/lib.r	Tue May 24 19:49:14 2016 -0400
+++ b/lib.r	Mon Jul 25 09:49:16 2016 -0400
@@ -1,10 +1,10 @@
-
 ##
 ## This function launch IPO functions to get the best parameters for xcmsSet
 ## A sample among the whole dataset is used to save time
 ##
 ipo4xcmsSet = function(directory, parametersOutput, listArguments, samplebyclass=4) {
     setwd(directory)
+    #@TODO: check the behaviour of direcory = "." ?
     files = list.files(".", recursive=T)  # "KO/ko15.CDF" "KO/ko16.CDF" "WT/wt15.CDF" "WT/wt16.CDF"
     files_classes = basename(dirname(files))    # "KO", "KO", "WT", "WT"