Mercurial > repos > lecorguille > ipo
comparison ipo4xcmsSet.xml @ 10:57f180a8eaae draft default tip
planemo upload for repository https://github.com/rietho/IPO commit d25c744220e416cce158161fa7dc3b0f153a5c11
| author | workflow4metabolomics |
|---|---|
| date | Mon, 11 Sep 2023 22:36:51 +0000 |
| parents | 364756ea5f42 |
| children |
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| 9:364756ea5f42 | 10:57f180a8eaae |
|---|---|
| 1 <tool id="ipo4xcmsSet" name="IPO for xcmsSet" version="@TOOL_VERSION@+galaxy0"> | 1 <tool id="ipo4xcmsSet" name="IPO for xcmsSet" version="@TOOL_VERSION@+galaxy1"> |
| 2 | 2 |
| 3 <description>IPO optimization process for xcms.findChromPeaks</description> | 3 <description>IPO optimization process for xcms.findChromPeaks</description> |
| 4 | 4 |
| 5 <macros> | 5 <macros> |
| 6 <import>macros.xml</import> | 6 <import>macros.xml</import> |
| 9 <expand macro="requirements"/> | 9 <expand macro="requirements"/> |
| 10 | 10 |
| 11 <command detect_errors="exit_code"><![CDATA[ | 11 <command detect_errors="exit_code"><![CDATA[ |
| 12 LANG=C Rscript '$__tool_directory__/ipo4xcmsSet.r' | 12 LANG=C Rscript '$__tool_directory__/ipo4xcmsSet.r' |
| 13 | 13 |
| 14 singlefile_galaxyPath '$input' singlefile_sampleName '$input.name' | 14 singlefile_galaxyPath '$input' singlefile_sampleName '$input.element_identifier' |
| 15 | 15 |
| 16 samplebyclass $samplebyclass | 16 samplebyclass $samplebyclass |
| 17 | 17 |
| 18 ## profmethod $profmethod | 18 ## profmethod $profmethod |
| 19 @COMMAND_NSLAVES@ | 19 @COMMAND_NSLAVES@ |