Mercurial > repos > lecorguille > hmmer_hmmfetch

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 76281ba139c693f75a900a42c314e74d9649b0ef-dirty
author lecorguille
date Tue, 01 Nov 2016 17:13:10 -0400
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6f312797c4c8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 76281ba139c693f75a900a42c314e74d9649b0ef-dirty
lecorguille
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1 #This is a sample file that enables the hmmer tools to find the HMM databases
6f312797c4c8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 76281ba139c693f75a900a42c314e74d9649b0ef-dirty
lecorguille
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2 #You will need to create these data files and then create
6f312797c4c8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 76281ba139c693f75a900a42c314e74d9649b0ef-dirty
lecorguille
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3 #a hmm_database.loc file similar to this one (store it in this directory)
6f312797c4c8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 76281ba139c693f75a900a42c314e74d9649b0ef-dirty
lecorguille
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4 #that points to the directories in which those files are stored.
6f312797c4c8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 76281ba139c693f75a900a42c314e74d9649b0ef-dirty
lecorguille
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5 #The hmm_database_indices.loc file has this format (longer white space characters are TAB characters):
6f312797c4c8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 76281ba139c693f75a900a42c314e74d9649b0ef-dirty
lecorguille
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6 #
6f312797c4c8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 76281ba139c693f75a900a42c314e74d9649b0ef-dirty
lecorguille
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7 #<unique_build_id> <display_name> <file_base_path>
6f312797c4c8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 76281ba139c693f75a900a42c314e74d9649b0ef-dirty
lecorguille
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8 #
6f312797c4c8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 76281ba139c693f75a900a42c314e74d9649b0ef-dirty
lecorguille
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9 #So, for example:
6f312797c4c8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 76281ba139c693f75a900a42c314e74d9649b0ef-dirty
lecorguille
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10 #pfam_a Pfam-a /data/db/pfam/Pfam-A.hmm