# HG changeset patch
# User workflow4metabolomics
# Date 1727698883 0
# Node ID 67f0ef6236f10180d4bd7cee41291bb3da8c01d3
# Parent  db77f2b67a7f0b200dc1a90a5bcacbe4f9d269ac
planemo upload commit a923a432239a1f2ffee2dae1281fe2d8f41bac38

diff -r db77f2b67a7f -r 67f0ef6236f1 CAMERA_annotateDiffreport.r
--- a/CAMERA_annotateDiffreport.r	Mon Sep 11 22:38:52 2023 +0000
+++ b/CAMERA_annotateDiffreport.r	Mon Sep 30 12:21:23 2024 +0000
@@ -35,8 +35,8 @@
 cat("\tARGUMENTS PROCESSING INFO\n")
 
 # Save arguments to generate a report
-if (!exists("listOFargs")) listOFargs <- list()
-listOFargs[[format(Sys.time(), "%y%m%d-%H:%M:%S_annotatediff")]] <- args
+if (!exists("listOFlistArguments")) listOFlistArguments <- list()
+listOFlistArguments[[format(Sys.time(), "%y%m%d-%H:%M:%S_annotatediff")]] <- args
 
 # We unzip automatically the chromatograms from the zip files.
 if (!exists("zipfile")) zipfile <- NULL
@@ -73,7 +73,7 @@
 cat("\n\n")
 
 # saving R data in .Rdata file to save the variables used in the present tool
-objects2save <- c("xa", "variableMetadata", "diffrep", "cAnnot", "listOFargs", "zipfile", "singlefile")
+objects2save <- c("xa", "variableMetadata", "diffrep", "cAnnot", "listOFlistArguments", "zipfile", "singlefile")
 save(list = objects2save[objects2save %in% ls()], file = "annotatediff.RData")
 
 cat("\n\n")
diff -r db77f2b67a7f -r 67f0ef6236f1 abims_CAMERA_annotateDiffreport.xml
--- a/abims_CAMERA_annotateDiffreport.xml	Mon Sep 11 22:38:52 2023 +0000
+++ b/abims_CAMERA_annotateDiffreport.xml	Mon Sep 30 12:21:23 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="abims_CAMERA_annotateDiffreport" name="CAMERA.annotate" version="2.2.6+camera@TOOL_VERSION@-galaxy@VERSION_SUFFIX@">
+<tool id="abims_CAMERA_annotateDiffreport" name="CAMERA.annotate" version="2.2.7+camera@TOOL_VERSION@-galaxy@VERSION_SUFFIX@">
 
     <description>CAMERA annotate function. Returns annotation results (isotope peaks, adducts and fragments) and a diffreport if more than one condition.</description>